Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_L03
(610 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 73 3e-14
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 64 2e-11
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 59 6e-10
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S... 51 2e-07
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 38 0.002
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 31 0.100
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 27 1.6
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 5.0
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 5.0
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 6.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.5
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 8.7
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 8.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 8.7
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 72.9 bits (171), Expect = 3e-14
Identities = 38/129 (29%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Frame = -2
Query: 603 NPVSCAIAXAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELV 424
+P++C+ A AV ++ ++L+ERA+ +G +L + + H VG++RGRGLF G+E+V
Sbjct: 323 HPIACSAALAVQTILRRDHLVERAAEMGKYLSEKLHETFDSHPNVGNIRGRGLFWGLEIV 382
Query: 423 TDRETRT--PATAEAXHVVNRMR-EENILI-----SRDGPDSNVLKFKPPMVFTTQDADR 268
D+ T+ P + + N++ E + + + DG + + PP + T + D
Sbjct: 383 KDKATKECFPPEYKVGSLANKIGCEHGVFVYPGMGTIDGTRGDHVLLAPPYIITREQIDE 442
Query: 267 LVETLDRVL 241
LVE L + +
Sbjct: 443 LVEALSKTI 451
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 64.1 bits (149), Expect = 2e-11
Identities = 42/126 (33%), Positives = 66/126 (52%)
Frame = -2
Query: 609 GGNPVSCAIAXAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVE 430
GGNP+ A++ A L+V++EE L ERA+ +G R ++ K +V VRGRGL V
Sbjct: 307 GGNPLGAAVSIAALEVVKEEKLTERAAVLGEKF--RTALIECKSPIVQKVRGRGLLNAV- 363
Query: 429 LVTDRETRTPATAEAXHVVNRMREENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLD 250
V D TA ++ MR +L N+++F PP+V T +D + +E +
Sbjct: 364 -VIDESKTNGRTAWDLCLI--MRSRGVLAK--PTHGNIIRFSPPLVITEEDLMKGIEVIK 418
Query: 249 RVLGEL 232
+ L +L
Sbjct: 419 KSLNDL 424
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 58.8 bits (136), Expect = 6e-10
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Frame = -2
Query: 603 NPVSCAIAXAVLDVIEEENLLERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELV 424
+P+ AI VL V++ +NL+E+A G L S LK KH L+ DVRG GL G+E+
Sbjct: 315 DPLPAAIGSTVLKVVKRDNLVEKAKISGELLRSDLLRLKDKHPLIVDVRGLGLLQGIEIA 374
Query: 423 TDRETRTPATAEAXHVVNRMRE--ENILISRDGPDSNVLKFKPPMVFTTQDADRLVETLD 250
+ + P+ + ++ E N I V + PP+ T ++ + +E D
Sbjct: 375 SCTDPSKPSDFLGTVIGDKCLELGMNCNIVHLRGIGGVFRIAPPLTVTDEEIHKAIEIFD 434
Query: 249 RVL 241
L
Sbjct: 435 SAL 437
>SPAC27F1.05c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 1|||Manual
Length = 484
Score = 50.8 bits (116), Expect = 2e-07
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Frame = -2
Query: 603 NPVSCAIAXAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGVEL 427
N + A A +D I + +LL R ++G + R L+ K ++ DVRGRG+ VG+E
Sbjct: 344 NTLGLAAGVATIDYIVQNDLLSRCRKLGGIMFDRLNKLQTKFPHVMKDVRGRGMIVGIEF 403
Query: 426 VTDRETRTPATAE--AXHVVNRMREE-NILISRDGPDSNVLKFKPPMVFTTQDADRLVET 256
E+ E A +VN + + ++ + + +V +F PP+ D D +
Sbjct: 404 YPIPESVQEEFGEYYATPIVNDLADTYHVQVYCSLNNPSVFRFLPPLTIPEADLDEGLSA 463
Query: 255 LDRVLGELD 229
++ + + D
Sbjct: 464 VESAVAKFD 472
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 609 GGNPVSCAIAXAVLDVIEEENLLERASRVGNHLLSRCEDLKHKH-RLVGDVRGRGLFVGV 433
GGNPV+C + ++ + +L+ + L SR +D K+ L+ GRGL +G+
Sbjct: 325 GGNPVACRVGTFCVNELGSSKILQNVRKQHKALTSRFDDFVAKYPNLIRGYAGRGLLLGL 384
Query: 432 E 430
+
Sbjct: 385 Q 385
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 31.5 bits (68), Expect = 0.100
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 518 TIYSVGVKI*SINIDSSAMSAVGVCL*ASNLSPTGKPEL 402
+IY + I S NIDSS V + AS +SP+ P+L
Sbjct: 166 SIYEFNIGIPSSNIDSSQFLPVSRAIAASEISPSSSPQL 204
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 1.6
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -2
Query: 321 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIK 145
NV K ++ T+Q R+ ETLD L + D+T I +E TPI T P ++ I+
Sbjct: 50 NVRKTYCGLIVTSQ---RVSETLDEALKQEDETERQKILME---TPIFTVGPATDDSIR 102
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = -2
Query: 288 TTQDADR--LVETLDRVLGELDD-TRISNIKLEVLVTPI 181
T +D +R LV+ +DR+L +LDD R K+ V++ P+
Sbjct: 427 TLEDQERHLLVKVIDRILYKLDDLVRPFTHKILVVIEPL 465
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 239 GSWMTQEYRILNWKY*SHRSTLKFRKRRTSLKVLYKRQXRLDKCLXTAR 93
G++ Q +R+ K +H ST+ + S+ + R+D L TAR
Sbjct: 221 GAFFIQFWRVQEHKLTNHWSTVNCQSLAKSMTEFKPQSYRVDSLLGTAR 269
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 321 NVLKFKPPMVFTTQDADRLVETLDRVLGELDDTRISNIKLEVLVTPINTEVPKKENVIKS 142
NV+ K P V T + + +ETL VLGE+ + + + V +K+N +S
Sbjct: 327 NVVDGKIPEVSTAANPEVCLETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEKDNENES 386
Query: 141 XV 136
V
Sbjct: 387 WV 388
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 6.5
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +2
Query: 191 TSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLINIFSSLIL 370
+ST++L + V+SNS +L+ STS S + T + T L+ ++ SS +
Sbjct: 828 SSTTSLAANKGVNSNSITSLNLESTS-SVTSTAYTTDSVTSTTALTSQGPSSSVVSSSLS 886
Query: 371 LTTCXASAV 397
TT ++++
Sbjct: 887 STTSLSTSI 895
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -2
Query: 540 ERASRVGNHLLSRCEDLKHKHRLVGDVRGRGLFVGVELVTDR 415
E+A R+ +C D HR+ RGLF G + + R
Sbjct: 38 EQAFRLNVSNSKKCFDTISGHRITLPTNARGLFTGYDYESKR 79
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 188 VTSTSNLIFDILVSSNSPKTLSRVSTSLSASCVVNTMGGLNFNTLLSGPSRLIN 349
VTS I L K + +S +L A C +N +G + T SR++N
Sbjct: 370 VTSMQMSISSSLSPDQCAKAIELLSKALPAWCTINLLGNIQVVTF----SRIVN 419
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 131 FCTXLLMTFSFFGTSVLIGVTSTSNLIFDILVSSNSP 241
F +L + FG SVL+ + S++N+ ++ S SP
Sbjct: 3 FILYVLASLVLFGLSVLLSLYSSANVYSATVMISQSP 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,179,032
Number of Sequences: 5004
Number of extensions: 40329
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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