Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L02
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    30   0.25 
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    28   1.3  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   3.0  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 378  LLQNESFYAILCHILIYMSIPP*DLGRL 461
            +LQ++SF  IL H ++Y  I P D G+L
Sbjct: 977  ILQSDSFVGILWHTIVYAYIYPYDQGKL 1004


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 285 IINRCIF*LVFIVFCSCSDMTVHASNYHDDILLQNESFYAILCHILIYMSI 437
           I+  C F +   +  SC  +  H  NY   +L    S   IL  I+IY S+
Sbjct: 5   IVALCGFFVAIALVLSCISIITHLKNYKKPVL--QRSVVRILMMIVIYSSV 53


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 204 CHVFGEYYSIISQFSKSLT 260
           C + G YYS++S+  K++T
Sbjct: 341 CSIIGNYYSLLSEHEKAVT 359


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 465 VSSGRGLKGGSTCKLKCD 412
           +SS RG+KG +T   KCD
Sbjct: 815 LSSTRGIKGNATITFKCD 832


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 518 VNRRFHHLTAASAAMEQQYQAAEVSRGDR 432
           VNR+ H L +   AM+ + +++ VSR  R
Sbjct: 540 VNRQIHKLQSTLQAMKSRARSSSVSRRSR 568


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,473
Number of Sequences: 5004
Number of extensions: 48901
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)