Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L02
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0050 - 19245087-19245113,19245306-19245449,19245546-192456...    30   1.4  
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536...    29   4.1  
11_05_0087 + 18970741-18972702                                         29   4.1  
09_04_0688 + 19475847-19477034,19477133-19477384,19477778-194778...    28   5.5  
08_02_1461 - 27299891-27301870                                         28   7.2  
04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183...    27   9.6  

>02_04_0050 -
           19245087-19245113,19245306-19245449,19245546-19245637,
           19245733-19245811,19245902-19245968,19246084-19246175,
           19246267-19246383,19246472-19246583,19246884-19246990,
           19247113-19247189,19247351-19247432,19247526-19247663,
           19248176-19248234,19249155-19249233
          Length = 423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -3

Query: 600 PTGANSLTCRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGRGLKGG 436
           P  A +  C  +   NG LP  +  SWC+ PF P  G +S   A V+   GL+ G
Sbjct: 251 PVYARTKQCSINYPQNGPLPP-DAPSWCQAPFDP-EGLLSSVMAIVTCLIGLQFG 303


>11_06_0013 -
           19252779-19252805,19252947-19253090,19253572-19253663,
           19253757-19253835,19253965-19254031,19254163-19254254,
           19254986-19255102,19255254-19255365,19255479-19255594,
           19255680-19255756,19255912-19255993,19256077-19256214,
           19258806-19259009
          Length = 448

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -3

Query: 555 NGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGRGLKGG 436
           NG LP  N  SWC+ PF P  G +S   A V+   GL+ G
Sbjct: 291 NGPLPP-NAPSWCEAPFDP-EGLLSSLMAIVTCLIGLQIG 328


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = -3

Query: 576 CRDDLK--WNGHLPS-----CNVRSWCKPPFPPSHGRISC-NGATVSSGRGLKGGSTCKL 421
           CRD L+  W   L          R W KPP PP   +ISC N +   +G  + G S    
Sbjct: 517 CRDVLRRRWQADLDESVHRLARRRGWPKPPPPPPPTKISCMNQSLDDAGGDIHGLSGRSF 576

Query: 420 KC 415
            C
Sbjct: 577 AC 578


>09_04_0688 +
           19475847-19477034,19477133-19477384,19477778-19477858,
           19477907-19478072,19479009-19479445,19479781-19479837
          Length = 726

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -3

Query: 483 SCNGATVSSGRGLKGGSTCKLKCDKGWRKSSHSVTKCHRGSWTHELSCQN 334
           +CN    S   G K  + C ++CD      S S+     GS T+   CQ+
Sbjct: 569 NCNLIDDSEKGGRKNMTCCSMECDIRESNDSSSLETSENGSSTNVCCCQS 618


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -3

Query: 555 NGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGRGLKGGSTCKLKCDKGW 403
           NGH P   +R    PP PP    + C G   +   GL      +L+C   W
Sbjct: 460 NGHSPE--IREADPPPPPPPIMEVECRGLDHADALGLIAIGN-RLRCISNW 507


>04_01_0160 +
           1830671-1830779,1830898-1830971,1831374-1831671,
           1831900-1832867,1833504-1833716,1834034-1834237,
           1835063-1835104
          Length = 635

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
 Frame = -3

Query: 615 DPTTEPTGANSLTCRD--DLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGAT-----VSS 457
           D T+     NS+ C+D   +    +    N+ S C+ P   S+  IS    T     +SS
Sbjct: 29  DSTSSYQPCNSMKCKDGTQIMSLANEDVSNLASDCQEPPSESNHAISHGSNTDSKEEMSS 88

Query: 456 GRGLKGGSTCKLKCDKGWRKSS--HSVTKCHRGS 361
           G G +   +C       WR SS   SV+    GS
Sbjct: 89  GSGYRRQQSCFSSSTCSWRSSSEVESVSSTPDGS 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,405
Number of Sequences: 37544
Number of extensions: 340939
Number of successful extensions: 905
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)