Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L02
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81078-4|CAJ15165.1|  392|Caenorhabditis elegans Hypothetical pr...    40   0.001
U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical pr...    36   0.033
AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical...    33   0.13 
Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    33   0.23 
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    33   0.23 
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    29   3.7  

>Z81078-4|CAJ15165.1|  392|Caenorhabditis elegans Hypothetical
           protein F36H2.5 protein.
          Length = 392

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = -3

Query: 519 CKPPFPPSHGRISCNGATVSSGRGLKGGSTCKLKCDKGWRKSSHSVTKCHRGSW 358
           C PP  P+ G I+ +G   S+    + G+T  LKC+ G++ +  S + C +GS+
Sbjct: 259 CPPPIAPAFGEITFSG--FSTKGTFEDGTTAALKCNLGYKPTGPSFSTCRKGSF 310



 Score = 32.7 bits (71), Expect = 0.23
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
 Frame = -3

Query: 603 EPTGANSLTCRDDLKWNGHLPSCNVRSW------CKPPFPPSHGRISCNGATVSSGRGL- 445
           +PTG +  TCR    +   +  C+  S       C P  PP + R+      + SG  L 
Sbjct: 296 KPTGPSFSTCRKG-SFRPIIGKCSNGSEHQLPGVCVPLTPPKNARV----VYIQSGTSLD 350

Query: 444 -KGGSTCKLKCDKGWRKSSHSVTKCHRGSW 358
            + G+T  L C++G+  +  +  +C  G W
Sbjct: 351 FEDGTTALLYCEEGFAVTGVATLRCETGQW 380


>U53344-4|AAA96225.2|  575|Caenorhabditis elegans Hypothetical
           protein T07H6.5 protein.
          Length = 575

 Score = 35.5 bits (78), Expect = 0.033
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
 Frame = -3

Query: 627 FTCRDPTTEPTGANSLTCRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGRG 448
           F C +  T   GA+   C +D +W+  +P C   + C+ P    +G+I       S G+ 
Sbjct: 286 FRCLETMTHE-GASKAKCMEDGQWSAPIPRC--LASCRVPH-IQNGKI----RDKSEGQL 337

Query: 447 LKGGSTCKLKCDKGWRKSSHSVTKCHRGSWTH-----ELSCQN 334
           +  GS   ++C+K    +      C   +W+H      LSC N
Sbjct: 338 IASGSKVIVECNKQHEANIDERLICSNSTWSHVPVCSPLSCHN 380


>AC024791-12|AAT81181.1|  401|Caenorhabditis elegans Hypothetical
           protein Y47G6A.7b protein.
          Length = 401

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 557 GMAICLLVMFVHGVNRRFHHLTAASAAMEQQY 462
           G+ +CL  M +HG+N+R   L+  SA  + QY
Sbjct: 363 GLVLCLSGMLLHGMNKRHQRLSRISADTDHQY 394


>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 627 FTCRDPTTEPTGANS-LTCRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGR 451
           + C   T    G N    CR + + + +L +C+ R+   P  PP H  I C  +T     
Sbjct: 570 YCCNPDTCSLHGKNEEKICRQESECS-NLQTCDGRNAQCPVSPPKHDGIPCQDSTKVCSS 628

Query: 450 GLKGGSTCKL 421
           G   GS C +
Sbjct: 629 GQCNGSVCAM 638


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 627 FTCRDPTTEPTGANS-LTCRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGR 451
           + C   T    G N    CR + + + +L +C+ R+   P  PP H  I C  +T     
Sbjct: 570 YCCNPDTCSLHGKNEEKICRQESECS-NLQTCDGRNAQCPVSPPKHDGIPCQDSTKVCSS 628

Query: 450 GLKGGSTCKL 421
           G   GS C +
Sbjct: 629 GQCNGSVCAM 638


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
 Frame = -3

Query: 636  TCSFTCRDPTTEPTGANSLTCRDDLKWNGHLPSCNVR-SWCKPPFPPSHGRISCNGATVS 460
            T + TC +  T  TG++  +C + + W   L SC    +   P + P    +     T S
Sbjct: 1214 TATLTCLNSATL-TGSSYSSCSNGV-WTPTLGSCTSSGTGTGPCYTPPLTPVGAT-LTYS 1270

Query: 459  SG--RGLKGGSTCKLKCDKGWRKSSHSVTKCHRGSWTHEL-SCQNKN 328
            SG       GST  + C  G      S++ C   +W+  L SC   +
Sbjct: 1271 SGYFAPWTAGSTATMSCPAGQTVIGTSISYCTNSAWSPALGSCSGSS 1317


>U53344-3|AAA96224.1|  702|Caenorhabditis elegans Hypothetical
           protein T07H6.4 protein.
          Length = 702

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = -3

Query: 594 GANSLTCRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGRGLKGGSTCKLKC 415
           G+   TC +D  W+   P C V + C   F  +  R++    TV+S R    G     KC
Sbjct: 497 GSAVSTCLEDATWSHSAPRC-VAAHCPAVF-VNGTRMT---VTVTSYR---TGGVAHFKC 548

Query: 414 DKGWRKSSHSVTKC-HRGSWTHE 349
            KG+         C  +G+W+H+
Sbjct: 549 HKGFTLIGEQNLHCTTQGTWSHD 571


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = -3

Query: 576 CRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSGRGLKGGSTCKLKCDKGWRK 397
           C+ D  W+G  P+C +    +PP   ++GR+    +T          S     C +G+R 
Sbjct: 588 CQSDGIWSGSEPTCELVDCGRPPL-IANGRVDVESSTFE--------SAANYTCHQGFRL 638

Query: 396 SSHSVTKC-HRGSW 358
                  C  RG W
Sbjct: 639 IGPESLMCGDRGEW 652


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 591 ANSLTCRDDLKWNGHLPSCNVRSWCKPPFPPSHGRISCNGATVSSG 454
           AN  TCR+D       P C +R+ C P F P+     C  A   +G
Sbjct: 577 ANGTTCREDRVKCDKRP-CPIRALCLPNFQPNGKPSFCEVAGCGAG 621


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,566,876
Number of Sequences: 27780
Number of extensions: 291548
Number of successful extensions: 741
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)