Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L02
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.82 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
 Frame = -3

Query: 612  PTTEP---TGANSLTCRDDLKWNGHLPSCNVRSWCKPPFPPS 496
            P T P    G N +     ++   HLP      W  PPF PS
Sbjct: 1131 PFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPPFMPS 1172



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 407  PLSHFNLHVDPPLRPRPLDTVAP 475
            P + FN    PP  P P    AP
Sbjct: 1157 PFTPFNFWNPPPFMPSPFMAGAP 1179


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 92  VDMTHPHVRVVIFLPHDAGLNTL 160
           +DM +  V    FLPHD  L TL
Sbjct: 518 IDMEYSSVAQQQFLPHDDFLETL 540


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 518 VNRRFHHLTAASAA 477
           +NR+ HH T++S+A
Sbjct: 407 INRKVHHTTSSSSA 420


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 407 PLSHFNLHVDPPLRPRP 457
           PLS F +H  P L P P
Sbjct: 186 PLSDFVIHRSPELVPMP 202


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,135
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)