Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_L01
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    54   7e-08
11_01_0535 + 4234282-4235082                                           30   1.4  
06_03_1077 + 27417255-27417386,27417504-27417557,27417637-274178...    29   4.2  
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    28   5.6  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    28   5.6  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = -3

Query: 622 IRRIPKPDGN-----PFSLLXNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMA 458
           +R +  P GN     P   L N V+C NYT E   WL F I T+     +F       M 
Sbjct: 240 LRNLRSPSGNGGYQIPRGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASIMT 299

Query: 457 VWAIGKHRNYKK 422
            WA+GKHR  KK
Sbjct: 300 NWALGKHRRLKK 311


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -3

Query: 580 LXNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YP 404
           L + V+CPNY  E   WL + ++     A  F       +   A  +   Y  +F D YP
Sbjct: 196 LFDLVACPNYFGETVEWLGYALVAWTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYP 255

Query: 403 KGRKA 389
             RKA
Sbjct: 256 ASRKA 260


>06_03_1077 +
           27417255-27417386,27417504-27417557,27417637-27417801,
           27418131-27418496
          Length = 238

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 219 WVSDDILEGSG---FCLFWYATVWCGNNK*DYYNRTG 118
           WV D    G     F + W   +W  + + DYYN+TG
Sbjct: 43  WVIDPTTYGDSKTHFFVSWTVLIWMHDIQADYYNKTG 79


>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +1

Query: 406 GSLGIPSCSCDVYRWPK 456
           G +G+ +C C++Y WP+
Sbjct: 23  GRIGVGACGCEMYVWPR 39


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 225 PWWVSDDILEGSGFCLFWYATVWCGNNK 142
           PWW++   LEGSG    W    W   +K
Sbjct: 35  PWWLTGHDLEGSGCVWEWGLHPWLPKSK 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,736,406
Number of Sequences: 37544
Number of extensions: 343806
Number of successful extensions: 710
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)