Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_K23
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 36 0.004
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 32 0.076
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.13
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 30 0.31
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 29 0.54
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 29 0.54
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 1.2
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 27 2.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.9
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 5.0
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 26 5.0
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 26 5.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 25 6.6
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 6.6
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 25 8.8
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 36.3 bits (80), Expect = 0.004
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Frame = -3
Query: 615 EARLLAEDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEE-----LKVVGNSL 451
EA AE A+ K EV +L+ E E E + ++ ++++ ELEEE LK +
Sbjct: 17 EAVARAEAAEAKLKEVELQLSLKEQEYESLSRKSEAAESQLEELEEETKQLRLKADNEDI 76
Query: 450 KSLEVSE-----EKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKXLQKEVDRLEDE 286
+ E + E + +E + E+ V+ L++E D +E +
Sbjct: 77 QKTEAEQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQK 136
Query: 285 LGINKDRYKSLADEMDSTFAEL 220
L D+Y + E+D L
Sbjct: 137 LEEMTDKYTKVKAELDEVHQAL 158
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 31.9 bits (69), Expect = 0.076
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = -3
Query: 615 EARLLAEDADG----KSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLK 448
E RLL E A KS EVS L+ E+ ED + S D +++ L ELK N +
Sbjct: 564 ELRLLQEKAASLERNKSSEVSNLLSRYNTEVAHLEDALHSKDRELANLGVELKSTENRYR 623
Query: 447 SLEVSEEK 424
L +E+
Sbjct: 624 QLLQEKEE 631
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 31.1 bits (67), Expect = 0.13
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Frame = -3
Query: 600 AEDADGKSDEVSRKLAFVED---ELEVAEDRVKSGDAKISELEEELKV----VGNSLKSL 442
A+D++GK VS++ A +E+ +L + E+ + + K++ E++LK + N L +
Sbjct: 188 ADDSEGKQTLVSKREAALEEFQSKLLIRENEINKRELKMNGKEDDLKKREKDLENRLLKV 247
Query: 441 EVSEEKANQR 412
E E+ N+R
Sbjct: 248 EEHEKSLNER 257
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 29.9 bits (64), Expect = 0.31
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = -3
Query: 570 VSRKLAFVEDEL-------EVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQR 412
+ R+L VEDEL V + R + + +IS+L + L+ N+++ L++ EK+ ++
Sbjct: 519 LQRRLRMVEDELHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKK 578
Query: 411 VEE 403
E+
Sbjct: 579 NED 581
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = -3
Query: 549 VEDELEVAED-RVKSGDAKISELEEELKVV 463
V +E++V D RV++ AK+S LEE LK++
Sbjct: 685 VMEEVKVYNDSRVEALLAKVSSLEETLKIL 714
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -3
Query: 570 VSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 409
VSR + + E+ E +K +SELE EL+ S L++ EK +++
Sbjct: 728 VSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSRDELQIQVEKVEEKI 781
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.54
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Frame = -3
Query: 525 EDRVKSGDAKISELEEELKVVGNSLKSLEV---SEEKANQR 412
E+R+K+ DA I EE+ K + ++++SLE+ EKAN++
Sbjct: 47 EERIKACDAGIQTSEEQKKELEHTMQSLEMIINVLEKANEK 87
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/62 (20%), Positives = 31/62 (50%)
Frame = -3
Query: 588 DGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 409
+ + + V R L E++L++ + + ++ + E+ N L+SLE + + R+
Sbjct: 844 ESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESLEELQHEVATRI 903
Query: 408 EE 403
E+
Sbjct: 904 EQ 905
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -3
Query: 546 EDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 409
E E E A K D+K S++EEE + ++ E+ EEK N+ +
Sbjct: 15 ETESESANGDTKQDDSKKSQVEEE----EDGIEESELGEEKDNKTI 56
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/88 (21%), Positives = 35/88 (39%)
Frame = -3
Query: 486 LEEELKVVGNSLKSLEVSEEKANQRVEEFXXXXXXXXXXXKXXXXXXXXXEKTVKXLQKE 307
LE+E + + LKSLE ++ + EE K K + Q+E
Sbjct: 897 LEQESAQLNSGLKSLEAEKQLLHTENEELHIRLDKLTGKLKIEESKSSDLGKKLTARQEE 956
Query: 306 VDRLEDELGINKDRYKSLADEMDSTFAE 223
+ L++E S+ ++D T ++
Sbjct: 957 ISNLKEENMSQSQAITSVKSKLDETLSK 984
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 5.0
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -3
Query: 588 DGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRV 409
+ K + +S K A E E ++ K K EEE V + E E+K N V
Sbjct: 7 NNKDESISTKNALEEKSNETKDETSKR---KHDPAEEE-SAVSTKVSKSEPLEDKGNAEV 62
Query: 408 EEF 400
+EF
Sbjct: 63 KEF 65
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = -3
Query: 576 DEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSEEKANQRVEE 403
D+ + + F E + E A + + ++ +LEE+++ L++++ S + QR+E+
Sbjct: 585 DQQTTEAPFEEPD-EPAHEPTEEEQEEMRKLEEKIESTKYGLETIQTSGKTIKQRIEQ 641
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 578 PTRFRENWPSLKTNSKSPKTVSSLVTLRSQSLKKN*RSSVTPLNLSK 438
PTR ++KT K +T SL+ +S++LKK R V + +K
Sbjct: 11 PTRM--TLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAK 55
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = -1
Query: 170 NXTCTHTYAAPLPHT---PQTXCTINYTTTRIHVYT*CNNIY*YFDVK 36
N C + L HT P C + ++ ++ T CN FDV+
Sbjct: 295 NPACKRVFNINLVHTLEHPSVVCCVKFSNNGKYLATGCNQAANVFDVQ 342
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 611 PVSSPRTLTXNPTRFRENWPSLKTNSKSPKTVSSLVTLRSQS 486
PVS+P T + + F ++P+ + S S SS S S
Sbjct: 132 PVSTPETSATSSSEFFTSYPATSSESSSSYPASSTEVASSYS 173
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 597 EDADGKSDEVSRKLAFVEDELEVAEDRVKSGDAKISELEEELKVVGNSLKSLEVSE-EKA 421
E+ D D R F E E ++ SG ++ +EL+EE NS+K + + E EK
Sbjct: 59 EERDAHLDRFRRDSTF---ESETSDHEDFSGGSE-NELDEETTKNANSIKKISLEEVEKQ 114
Query: 420 NQRVE 406
+ ++
Sbjct: 115 RKAIK 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,022
Number of Sequences: 5004
Number of extensions: 25013
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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