Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K23
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   9.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 371 LPVRVFSCFLNSSTRWLAFS--SDT 439
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 371 LPVRVFSCFLNSSTRWLAFS--SDT 439
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 371 LPVRVFSCFLNSSTRWLAFS--SDT 439
           LPV +     + STRW+AF+  SDT
Sbjct: 106 LPVAISFFNDDLSTRWIAFNCLSDT 130


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 164 TCTHTYAAPLPHTPQTXCT 108
           TCT+    P  HT    CT
Sbjct: 426 TCTNCGPNPCTHTTTNGCT 444


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 164 TCTHTYAAPLPHTPQTXCT 108
           TCT+    P  HT    CT
Sbjct: 412 TCTNCGPNPCTHTTTNGCT 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 164 TCTHTYAAPLPHTPQTXCT 108
           TCT+    P  HT    CT
Sbjct: 446 TCTNCGPNPCTHTTTNGCT 464


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 164 TCTHTYAAPLPHTPQTXCT 108
           TCT+    P  HT    CT
Sbjct: 395 TCTNCGPNPCTHTTTNGCT 413


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 269 IDTRAWLMRWIPPSPSWL 216
           ID R W  R+ P S  W+
Sbjct: 71  IDKRPWWERYQPISYKWI 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,457
Number of Sequences: 438
Number of extensions: 1865
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)