Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K17
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    28   1.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    28   1.6  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   2.1  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   3.7  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   4.9  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 350  LTIVKLVSKVKCLIIHHDVRVEFLEYPVAVVPGXSLWPSLEGWETRASSS 499
            +TI +L S+  CL  H +     +++  AV    ++WP  +   T A S+
Sbjct: 1616 VTISELTSESGCLFFHFEKDDSGIDHVTAVASHFNVWPDTQTVMTDAKST 1665


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 617 MPARRIVYVGDGRNDYCPATSLPPHATVFPRRGYPLDDLVKKTLSSPNPQVKAKVIXLGQ 438
           +P   +V + +G N   P+T +   A  FP R + +   VK  + S N   K  ++ L +
Sbjct: 501 IPQGIVVTISEGINGLVPSTHMADIALQFPERRFKVGSSVKCRVLSTNVLRKRVLLTLKK 560

Query: 437 LL 432
            L
Sbjct: 561 SL 562


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 630 LVLGDAGQAYRVCRGREKRLLPRHVAAPTRDSVPPPR 520
           L++G AGQ        E+R+  +    PT   +PPPR
Sbjct: 534 LIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPR 570


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -3

Query: 522 RLSTGRPGEEDALVSQPSSEGQSDXPGTTATGYSRNST 409
           +LS  R   E+AL  Q S EGQSD P T    +S  +T
Sbjct: 128 KLSKLREFREEALY-QASLEGQSDLPITLENSFSNLNT 164


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 3   LLFIVYSFSLVMCTVC 50
           L+F  Y FS+V+CT C
Sbjct: 139 LMFAAYVFSVVLCTFC 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,295
Number of Sequences: 5004
Number of extensions: 58526
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)