Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K17
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP ...    29   3.4  
Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    28   6.0  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    28   7.9  
AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z22177-2|CAA80145.1| 1418|Caenorhabditis elegans Hypothetical protein
            ZK512.3 protein.
          Length = 1418

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 659  NLCKSEALRRWCSEMPARRIVYVGDGRNDYCPATSLPPHATV 534
            NL +SE  R+     P R    VG   N  CP+ SLP +  V
Sbjct: 946  NLSESETCRKSFLGAPKRYCSSVGQYANPSCPSQSLPAYLIV 987


>AJ272503-1|CAC81659.1| 1027|Caenorhabditis elegans putative TRP
           homologous cationchannel protein protein.
          Length = 1027

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 659 NLCKSEALRRWCSEMPARRIVYVGDGRNDYCPATSLPPHATV 534
           NL +SE  R+     P R    VG   N  CP+ SLP +  V
Sbjct: 555 NLSESETCRKSFLGAPKRYCSSVGQYANPSCPSQSLPAYLIV 596


>Z77134-2|CAB00873.1|  877|Caenorhabditis elegans Hypothetical
           protein R09H10.4 protein.
          Length = 877

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 92  THTYTLFCLLFKVYSQIEYRLSLSLILFVYSIVLEKSVIIEV 217
           TH   LFC +  ++  I   L++++IL    +V+  S +++V
Sbjct: 464 THLLVLFCFIVYIFVSIRGALNINIILSPDKLVIGDSPLLQV 505


>Z70204-1|CAA94111.1|  643|Caenorhabditis elegans Hypothetical
           protein C11G6.1 protein.
          Length = 643

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 600 RVCRGREKRLLPRHVAAPTRDSVPP---PRLSTGRPGEEDA--LVSQPSSEGQSDXPGTT 436
           ++ R + K +LP  V AP + ++PP   P  +TG      A  LV Q S E  +  P   
Sbjct: 469 QLLRAKSKIVLPNSVVAPIQTTLPPAQQPATATGMVSLTIAPILVPQTSMEPATSVPVVG 528

Query: 435 AT 430
           AT
Sbjct: 529 AT 530


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 151  IKFVFNIICL*YSLGEICDYRSLLVFDNRTMILFKIIIEINNYGRIST 294
            I+   +I+ + YS+GE     +L  FD  T+    I ++ NNY  +S+
Sbjct: 1119 IRTFLDILLIKYSVGEKGSRFTLATFDGTTVEYSCIFVQTNNYYDLSS 1166


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 516  STGRPGEEDALVSQPSSEGQSDXPGTTATGYSRNSTRTS 400
            ST  PG   + V++PS+   S   G+TAT  S  ++ TS
Sbjct: 1049 STETPGSTGSTVTKPSTVSGSASSGSTATMGSTEASSTS 1087


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 549 PTRDSVPPPRLSTGRPGEEDALVSQPSS 466
           P+RDSV PP    G+P   ++L S  SS
Sbjct: 230 PSRDSVTPPDRLLGKPLFRESLTSHASS 257


>AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical
           protein Y60A9.1 protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 401 DVRVEFLEYPVAVVPGXSLWPSLEGWETRASSSPGRPVDSR 523
           D+R   LE+P + +P   + P      TR S  P RP  SR
Sbjct: 39  DIRSPSLEFPKSGIPRQDIIPYNPHIRTRTSRLPIRPSSSR 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,516
Number of Sequences: 27780
Number of extensions: 355417
Number of successful extensions: 1083
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)