Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K17
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.9  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -1

Query: 593 VGDGRNDYCPATSLPPHATVFPRRGYPLDDL 501
           VGD     C  T  PP   V+ R G  L+ L
Sbjct: 324 VGDNVEIKCDVTGTPPPPLVWRRNGADLETL 354


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 689 KQTSCPRCPKNLCKSEALRRWCSEMPARR 603
           K  +C  C K LC   +L+R  ++  A R
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAER 32


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 568 APPRRCPHTRQCSPAAAIH 512
           APP + P     SPA+ IH
Sbjct: 54  APPSQNPSQMMISPASGIH 72


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 381 FTLDTNFTIVNTIYRR 334
           F     F  VNTIYRR
Sbjct: 306 FAAMVEFAFVNTIYRR 321


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 LTIVKLVSKVKCLIIHHD 403
           +TIV L+  + C ++H D
Sbjct: 3   ITIVSLLCVIYCALVHAD 20


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 LTIVKLVSKVKCLIIHHD 403
           +TIV L+  + C ++H D
Sbjct: 3   ITIVSLLCVIYCALVHAD 20


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/39 (25%), Positives = 14/39 (35%)
 Frame = -3

Query: 543  RDSVPPPRLSTGRPGEEDALVSQPSSEGQSDXPGTTATG 427
            R    PP+ +  + G+  A     S E     P T   G
Sbjct: 994  RGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKG 1032


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,554
Number of Sequences: 438
Number of extensions: 4709
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)