Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K14
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0321 + 24091997-24092530                                         29   2.7  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   4.7  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    28   8.1  

>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -3

Query: 674 ALRRKSARQGSEKXNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGKVLRPRSMPR 495
           A    S RQ  ++  A +R  RRL+ +   +  S  GS   +  + +VPG + R  + PR
Sbjct: 93  AAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLLNFYVPGLLTRSMTTPR 151

Query: 494 P 492
           P
Sbjct: 152 P 152


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 579 VCTFQLHLEPPPWPALGVXLFASL 650
           V  FQ  + PPPWPA G   F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = -1

Query: 277 HYNKRM*AGFLGAGLI---KKKNSKAQKMKCQSAIFLPSNLLYEKS 149
           +YNK M   F+G  LI   +  N +    K + A  LP+N+LYE++
Sbjct: 428 YYNKGMFEDFVGTILIPILETLNIEYANRKVRKAKKLPTNVLYERA 473


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,809,709
Number of Sequences: 37544
Number of extensions: 230751
Number of successful extensions: 517
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)