Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K14
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    60   2e-09
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    28   7.3  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 40/107 (37%), Positives = 53/107 (49%)
 Frame = -2

Query: 696 QLLAAXKRAAEKVSXXXXXXXXXXXXXXXXXQDEVXXXXXXXXXXXXXXEAKHMGTREGV 517
           QLLAA KRAAEK++                 Q EV              E +++GT+E +
Sbjct: 10  QLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQQYLGTKEDI 69

Query: 516 AAKIDAETKVKIEEMNXMVQTQKEAVIKDVLNLVYDIKPELHINYRL 376
            +KI  +T+ +I  M   V   K+AVI  +L LV DIKPELH N  L
Sbjct: 70  ESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 31  HLFNIQHRVTSRLXTFLIFFSYLNFKLS*RI-LNTWNGTELISHTINYLAKKL 186
           HLF I + + SR+  F IF +YL   +   I L      +L++   +Y++K+L
Sbjct: 463 HLFKILNPLPSRIGVFFIFLAYLFISIHFAIGLPLGLDLKLLAPDDSYVSKEL 515


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 605 LKMKLKSTDRSVK-GSSKNLKPSTWVPGKVLRPRSMPR 495
           + +K  S   S K  SS+ LKP T++P     P SMP+
Sbjct: 3   INIKYSSKFSSSKTSSSEELKPKTYIPAYYQPPVSMPK 40


>AC006832-4|AAF39996.1|  485|Caenorhabditis elegans Hypothetical
           protein ZK355.4 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +1

Query: 130 TWNGTELISHTINYLAKKLHFDISFSAPCCFFF*LSRLQEN 252
           TW+  ELIS   NY  K +  +I   A  C F+ L +L  N
Sbjct: 324 TWDRVELISLPANYCTKDVG-NIRDWARVCIFYTLEKLPTN 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,134,868
Number of Sequences: 27780
Number of extensions: 212298
Number of successful extensions: 505
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)