Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K12
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces p...    34   0.020
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    29   1.0  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    26   5.4  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   5.4  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.4  
SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.4  

>SPBC1685.16 |vma9||V-type ATPase subunit e|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 33

 Score = 34.3 bits (75), Expect = 0.020
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 602 LILTAATCWLFWLCAYMAQMNPLIGP 525
           LILT + C+L W   Y+AQ++PL  P
Sbjct: 3   LILTFSCCYLLWAITYLAQLHPLEAP 28


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 721 SKWATPLSRSSFSPSFGVWLVLFAPSSHLKDQ 626
           S+W  P+++       GVW ++ AP SHL+D+
Sbjct: 47  SRWRAPVNKD-----LGVWDLVEAPGSHLRDE 73


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 683 SILWGVVGIICPIFAPKGPNRGIIQV 606
           ++LWG++ +I  +F P+ P R +IQV
Sbjct: 189 NLLWGIITMIGILFLPESP-RYLIQV 213


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 73  SLEXFDSFQLYFVFFSFNRKQIQGCSICESKKRKENYYCSQNLI*QFLGTDYKNWPQI-- 246
           +LE FD  Q++  F   ++K      +  +K    NY+  QN++   +  ++ + P    
Sbjct: 104 NLEKFDKKQVFAEFREKDKKDPAKLLVSHNKSPNRNYHHKQNVLGPSVKDEFVDLPSAGS 163

Query: 247 QIN 255
           QIN
Sbjct: 164 QIN 166


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 388 TIIVTFLNHPTKPLQGLLKSDD*ACVLLILF 480
           TI + +  HP +  QG++ +D  A ++L +F
Sbjct: 140 TIFIVYSPHPNETFQGIVLADHVARLVLCVF 170


>SPAC24B11.09 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 95  FNCILFFFLSIANKFKDARFVNLRREKKIITA 190
           FN  + FFL+I    + +R +  +R++K ITA
Sbjct: 73  FNATVNFFLAIVGAVQVSRILVYQRQQKRITA 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,109,650
Number of Sequences: 5004
Number of extensions: 64029
Number of successful extensions: 130
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)