Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K10
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical pr...    73   2e-13
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    32   0.32 
Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.     30   1.3  
AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.     30   1.3  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    29   2.3  
U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated p...    29   2.3  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    29   2.3  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    29   2.3  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    29   2.3  
U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U40945-4|AAA81722.2|  318|Caenorhabditis elegans Hypothetical pr...    28   5.3  

>U13642-6|AAG00038.1|  175|Caenorhabditis elegans Hypothetical
           protein ZC395.10 protein.
          Length = 175

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 12/166 (7%)
 Frame = -2

Query: 521 PPVLWAQRKEDVFLTFSV-ETKDPTIKIEKDSVYFRGEGAPDNRLHEVTIALYDTVLPEK 345
           P VLWAQR+  V+LT  V E K   +K E + ++F+G    D   +E T+  +D + P  
Sbjct: 5   PTVLWAQRESLVYLTIEVDEAKIEELKGEGNKLHFQGSSKTDK--YEATLEFFDEIDPAS 62

Query: 344 SVFVNKGRCVEMILRKEKTDGPFWPTLTKDKKKPHYLKIDFNKWXXXXXXXXXXNS---- 177
                    V  I  ++KT   +WP L ++K K H+LK+DF KW          ++    
Sbjct: 63  VKHTGSSTRVVEITVQKKTPA-WWPRLLQNKGKVHWLKVDFGKWKDEDEDDEAEDAGAGI 121

Query: 176 -------YDFEQMLQNFGGAGGPGQKAEKPAFDDLETDADDEN*PE 60
                  +D  Q +   GGAGG         F  LE D +D++ P+
Sbjct: 122 GGGMANGFDLNQYMSQMGGAGGAD-------FGGLEDDEEDDDMPD 160


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
           protein C33G3.6 protein.
          Length = 624

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 74  HHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNH--MNYFLQLHHPHHSIC*NQFS 235
           HHQ    SH     + S + +Q  Q +G++ RN+   N   Q ++P++ +  N  S
Sbjct: 390 HHQHHQQSHDQNSTISSVEYNQYQQKAGSYGRNYHPYNNHHQQYNPYNQVLENSSS 445


>Z48241-4|CAA88284.1|  468|Caenorhabditis elegans Hypothetical
           protein C32A3.1b protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 62  QVNSHHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNHM 178
           Q    HQ+Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458


>Z48241-3|CAC42265.1|  490|Caenorhabditis elegans Hypothetical
           protein C32A3.1a protein.
          Length = 490

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 62  QVNSHHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNHM 178
           Q    HQ+Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480


>AF241847-1|AAF71523.1|  468|Caenorhabditis elegans LAG-3B protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 62  QVNSHHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNHM 178
           Q    HQ+Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 420 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 458


>AF241846-1|AAF71522.1|  490|Caenorhabditis elegans LAG-3A protein.
          Length = 490

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 62  QVNSHHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNHM 178
           Q    HQ+Q   HQ    +P+    Q+H    A+  +HM
Sbjct: 442 QAQQQHQQQAQHHQMGYGIPNGYPQQMHMHPPAYGAHHM 480


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 56  QSQVN-SHHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNHMNY 184
           QSQVN +HH     S   Q      +DH      G +  NH NY
Sbjct: 196 QSQVNHNHHHSNHVSGNQQNRKNKNRDHSNQSYRGGYTHNHNNY 239


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 56  QSQVN-SHHQRQFPSHQTQVFLPSAQDHQLHQSSGAFARNHMNY 184
           QSQVN +HH     S   Q      +DH      G +  NH NY
Sbjct: 196 QSQVNHNHHHSNHVSGNQQNRKNKNRDHSNQSYRGGYTHNHNNY 239


>U55374-7|AAP82641.1|  286|Caenorhabditis elegans Uncoordinated
           protein 2, isoform d protein.
          Length = 286

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +2

Query: 92  PSHQTQVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLLLAS 271
           P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   L S
Sbjct: 148 PTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSPLIS 206

Query: 272 ARMDHLFF 295
            R  H ++
Sbjct: 207 PRSSHSYY 214


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +2

Query: 92   PSHQTQVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLLLAS 271
            P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   L S
Sbjct: 1788 PTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSPLIS 1846

Query: 272  ARMDHLFF 295
             R  H ++
Sbjct: 1847 PRSSHSYY 1854


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +2

Query: 92   PSHQTQVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLLLAS 271
            P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   L S
Sbjct: 1889 PTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSPLIS 1947

Query: 272  ARMDHLFF 295
             R  H ++
Sbjct: 1948 PRSSHSYY 1955


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = +2

Query: 92   PSHQTQVFLPSAQDHQLHQSSGAFARNHMNYFLQLHHPHHSIC*NQFSGNAAFSCLLLAS 271
            P+H    + PS+ +  L+ S G       +Y     H HH     Q      +S   L S
Sbjct: 1889 PTHYESAYQPSSYNQHLNDSYGLGTGYQRDYHTSHSHSHHPTS-QQQQHQPMYSTSPLIS 1947

Query: 272  ARMDHLFF 295
             R  H ++
Sbjct: 1948 PRSSHSYY 1955


>U64600-1|AAK39203.1|  500|Caenorhabditis elegans Hypothetical
           protein C33D12.2 protein.
          Length = 500

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 431 SVYFRGEGAPDNRLHEVTIALYDTVLPEKSVFV 333
           +V+F G+ +  N  HE+TI     V+P K+V V
Sbjct: 16  TVFFSGKSSEKNVCHEITIKHNVVVVPNKNVRV 48


>U40945-4|AAA81722.2|  318|Caenorhabditis elegans Hypothetical
           protein F10D7.4 protein.
          Length = 318

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 602 KLKIVPVKYSVKPCVT*NIMSSEISVPPPVLWAQRKEDVFLTFSVETKDPTI--KIEKDS 429
           KL I PVK       +   + S   + PP +WA  K+     F V+ ++  +  K+++D 
Sbjct: 198 KLIIEPVKSKPTDKKSQTSLHSSFIIEPPCVWAGNKQKGIFRFIVKLENEALLMKMDEDE 257

Query: 428 VYF 420
            +F
Sbjct: 258 NWF 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,199,419
Number of Sequences: 27780
Number of extensions: 322965
Number of successful extensions: 1032
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)