Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_K07
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1472 - 26753070-26753177,26753254-26753531,26753691-267538... 37 0.011
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 29 2.2
06_01_0499 - 3581145-3582425 29 2.2
08_02_0410 - 16842306-16842950,16844994-16845182 29 2.9
04_03_0865 + 20402711-20404057 29 2.9
08_02_0453 - 17331534-17331656,17332288-17332340,17332612-173327... 29 3.8
06_03_1190 - 28274801-28275163,28275662-28275853,28275965-282760... 28 6.7
01_06_0196 - 27410837-27413296 27 8.9
>07_03_1472 -
26753070-26753177,26753254-26753531,26753691-26753865,
26754974-26755468
Length = 351
Score = 37.1 bits (82), Expect = 0.011
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 8/177 (4%)
Frame = -1
Query: 598 TMHLTALCNTAXDNPGKLTSHDIVNYLLEHYPTDTLLFYSXXXXXXXXXXXR----KWTP 431
TM L L TA + LT I++ L++ + D + S + K P
Sbjct: 174 TMPLMKLACTALERV-PLTRKKIIDNLMKKFHQDLVFCRSPDDNELTVGVYQRQKEKIDP 232
Query: 430 ILDWFQKTFNVKQELANSI----QPPPVFTETRAVLARHFLSYDFAALTAINFGVEALKS 263
ILDW F K + S Q + VL ++ ++ A++ A+ A S
Sbjct: 233 ILDWVNTEFGFKPVVYTSFFGGKQDEGLANAVETVL-KNTTDFELASIDAM---AAAAHS 288
Query: 262 PILMLACMERRXXXXXXXXXXXXXXEYQLERWGRVPWAHGLSQADLTARVSAALLLV 92
++ LA + ++Q++RWG V H + ADL ++S+A++ +
Sbjct: 289 LVIPLAIFRGKLGIEQAIELIRLEEDHQVDRWGLVEGGHDVDIADLKVQMSSAVVFL 345
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 16 AYRCIDLIVNLGQISF*WHVSQ*RSVRGAGRRTRAPSGRPGSARAPTARGPSAPA 180
A R D+I ++ + +F +++RGA PS G+A A GPS A
Sbjct: 282 AKRTCDMISDISKCAFPRLFQTHQALRGAAEAVSKPSNTEGAAEATDVDGPSKEA 336
>06_01_0499 - 3581145-3582425
Length = 426
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 39 CESWADFVLMACFSVAQCTRSRAADTRAVRSAWLSPCAHGTRPQR 173
C+SW V CF+ Q S AA+ R + L G RPQR
Sbjct: 57 CKSWRAMVADPCFARLQLRHSTAAERRRHPPSMLVLPWWGWRPQR 101
>08_02_0410 - 16842306-16842950,16844994-16845182
Length = 277
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 85 RSVRGAGRRTRAPSGRPGSARAPTARGPSA 174
R V G GRR R G PG A A A SA
Sbjct: 140 RGVGGGGRRRRREGGEPGLAVAAAAASASA 169
>04_03_0865 + 20402711-20404057
Length = 448
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 62 FDGMFLSSAVYE-EQGGGHARRQVGLAQPVRPRHAAPAL 175
FD L+S E + G H +R VG +P P+ A PA+
Sbjct: 253 FDPELLASIERELSEEGAHIKRMVGSEKPKHPKAAPPAM 291
>08_02_0453 -
17331534-17331656,17332288-17332340,17332612-17332704,
17332747-17332903,17333246-17333384,17333467-17333529,
17337990-17338071,17338167-17338245,17338853-17339032,
17340010-17340272,17340486-17340622,17341662-17341729
Length = 478
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Frame = +1
Query: 181 DILLQVLLTIQLPRVQRGAPY----TPTLRSVTLMPRH 282
+I++ + LT+ L R+ RGAP T + + +MPRH
Sbjct: 272 NIIMDMPLTVDLTRILRGAPLIDFETESYARIGVMPRH 309
>06_03_1190 -
28274801-28275163,28275662-28275853,28275965-28276088,
28276177-28276320,28276524-28276640,28277189-28277308,
28277433-28277521,28277609-28277685,28278250-28278322,
28278578-28279012,28280247-28280442,28281270-28281490,
28281591-28281703,28282552-28283146,28283236-28283418,
28283548-28283712,28283808-28284029
Length = 1142
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +1
Query: 112 TRAPSGRPGSARAPTARGPSAPADILLQVLLTIQLPRVQRGAPYTPTLRSVTLMPRHR 285
T+ P R G A G A +L ++ + L + GA + PTLRS L + R
Sbjct: 3 TKPPQSRGGGGGGGGALGRRGFAALLAAAVIALALLCLFYGAAFAPTLRSRRLPLQRR 60
>01_06_0196 - 27410837-27413296
Length = 819
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 237 SIHANIKIGDFNASTPKFIAVSAAKSYDRKCRANTALVSV 356
SI+ + + DFNAS+P+ VSA ++ C AN +V+V
Sbjct: 414 SIYLKVPL-DFNASSPR---VSAQRAAGLACGANVTVVTV 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,396,515
Number of Sequences: 37544
Number of extensions: 316457
Number of successful extensions: 1160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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