Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K06
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.3  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   5.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.9  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 624 YFVMGISVSENYFSMRPLPVRKKYD 698
           Y V+ ISV+      RP+P  KKYD
Sbjct: 385 YSVLPISVANELRHSRPVPA-KKYD 408


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 624 YFVMGISVSENYFSMRPLPVRKKYD 698
           Y V+ ISV+      RP+P  KKYD
Sbjct: 385 YSVLPISVANELRHSRPVPA-KKYD 408


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
 Frame = -1

Query: 686 TYRQRS-HREII------FRYRNTHYKILISL*KKKQFYERY 582
           T R+RS  R+II      + Y N +YK   +   KK +Y+ Y
Sbjct: 304 TERERSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNY 345


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 482 NENAKYNLRTTYT*NNRPKSDYIFVTN 562
           N N KYN    Y  NN   +  ++  N
Sbjct: 93  NNNYKYNYNNKYNYNNNNYNKKLYYKN 119


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 492 AFSLHFILEISRMFYVTKYAVKCKKIN 412
           AF+   ++ +   F  T+Y   C+++N
Sbjct: 14  AFTYEQLVALENKFKTTRYLSVCERLN 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,443
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)