Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_K02
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z92973-8|CAO82049.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 529 RCTYSIYMYITYKCSVVHQIKKMLIK 452
           +CTY+I   IT+ CS    +KK L K
Sbjct: 279 QCTYNIDDQITFPCSETQSLKKWLKK 304


>Z81554-6|CAO82038.1|  517|Caenorhabditis elegans Hypothetical
           protein Y6G8.8 protein.
          Length = 517

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 529 RCTYSIYMYITYKCSVVHQIKKMLIK 452
           +CTY+I   IT+ CS    +KK L K
Sbjct: 279 QCTYNIDDQITFPCSETQSLKKWLKK 304


>Z71180-1|CAA94891.1|  267|Caenorhabditis elegans Hypothetical
           protein F22E12.3 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 423 MYSELTFTQLHSSAFKFSEGFYKCINLTECT 331
           M +E  F QL  + F+F++G  + +NL  CT
Sbjct: 66  MSNEHLFCQLTETYFQFNQGLRRILNLEICT 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,485,051
Number of Sequences: 27780
Number of extensions: 244563
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)