Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J24
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    31   0.22 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   4.7  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    25   8.2  

>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 322 HANFKIKKNLLININFVRK 378
           HAN + KK  L+NINFVRK
Sbjct: 569 HANARTKKKELLNINFVRK 587


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -3

Query: 439 YVLNMIMHFILIYLFRF*TFVY 374
           Y L+M+++ + +Y+F F TF++
Sbjct: 412 YALHMVINSVTLYIFLFRTFIW 433


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 283 GTMFLKKNKPSPSHANFKIKKNL 351
           GT  LK  KP P H   KI+++L
Sbjct: 15  GTNVLKMKKPLPLHMRTKIREHL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,857
Number of Sequences: 5004
Number of extensions: 49139
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)