Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J24
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022...    31   1.2  
03_03_0102 - 14434968-14435072,14435305-14435418                       28   8.6  

>01_06_1149 -
           34901338-34901466,34901707-34901838,34901940-34902290,
           34902301-34902619,34902756-34902784,34903641-34903715,
           34903799-34903900,34904002-34904120,34904752-34904875,
           34904976-34905026,34905143-34905241,34905751-34905861
          Length = 546

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 80  FNLATTLSKNNIHNSNQRGNVFCTQTMADFSSD 178
           +NL  T+  N+IHN   RG +    T   F  D
Sbjct: 370 YNLLKTMDPNDIHNEKSRGQITLEMTYKPFKED 402


>03_03_0102 - 14434968-14435072,14435305-14435418
          Length = 72

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 271 LATIGTMFLKKNKPSPSHANFKIKKNLLININFVRKQ 381
           +ATI  + L  + PSP H+  KIK +  + + F  +Q
Sbjct: 1   MATIDELLLPSSSPSPFHSELKIKDD-SVAVEFYSQQ 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,332,768
Number of Sequences: 37544
Number of extensions: 235787
Number of successful extensions: 309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)