Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J24
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine r...    31   0.63 
Z49888-6|CAD44128.1|  428|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z49888-5|CAA90065.2|  409|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z47069-5|CAD44131.1|  428|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z47069-4|CAA87339.2|  409|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AF098997-14|AAK71402.1|  321|Caenorhabditis elegans Serpentine
           receptor, class i protein32 protein.
          Length = 321

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
 Frame = -1

Query: 711 YRAMGIITL---VIALWLLMF--YSLN*IKYAYLMYDVRMCLFNLELSMI*ESMPL 559
           Y ++G I+L   VI + L++F  Y L+  KY  L Y V    + L+L+++ + MPL
Sbjct: 15  YYSIGFISLIFNVITILLIVFKSYKLDSFKYYLLAYQVSCANYVLQLTILFQPMPL 70


>Z49888-6|CAD44128.1|  428|Caenorhabditis elegans Hypothetical
           protein F47A4.1b protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 241 ICFIFCRY*NLATIGTMFLKKNKPSPSHANFKIKKN 348
           ICF+F     LATIG  FL +N+  P+  + +  KN
Sbjct: 336 ICFVFASLFELATIG--FLMRNEGKPATKSSRSTKN 369


>Z49888-5|CAA90065.2|  409|Caenorhabditis elegans Hypothetical
           protein F47A4.1a protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 241 ICFIFCRY*NLATIGTMFLKKNKPSPSHANFKIKKN 348
           ICF+F     LATIG  FL +N+  P+  + +  KN
Sbjct: 317 ICFVFASLFELATIG--FLMRNEGKPATKSSRSTKN 350


>Z47069-5|CAD44131.1|  428|Caenorhabditis elegans Hypothetical
           protein F47A4.1b protein.
          Length = 428

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 241 ICFIFCRY*NLATIGTMFLKKNKPSPSHANFKIKKN 348
           ICF+F     LATIG  FL +N+  P+  + +  KN
Sbjct: 336 ICFVFASLFELATIG--FLMRNEGKPATKSSRSTKN 369


>Z47069-4|CAA87339.2|  409|Caenorhabditis elegans Hypothetical
           protein F47A4.1a protein.
          Length = 409

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 241 ICFIFCRY*NLATIGTMFLKKNKPSPSHANFKIKKN 348
           ICF+F     LATIG  FL +N+  P+  + +  KN
Sbjct: 317 ICFVFASLFELATIG--FLMRNEGKPATKSSRSTKN 350


>AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical
           protein T11F1.2 protein.
          Length = 481

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 140 VFCTQTMADFSSDMSKLTAVNSCHSPMNFDH 232
           +F +  MADF+ D+ KLT  + C     F++
Sbjct: 44  LFLSCVMADFNYDLEKLTLTHKCDPQCTFNY 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,762
Number of Sequences: 27780
Number of extensions: 267967
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)