Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J23
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    29   0.63 
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    27   2.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   5.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.7  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.7  

>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 477 RILDIWYTLYFSCIISSKNL 418
           +ILDIWY L ++C + ++NL
Sbjct: 238 QILDIWYLLGWNCYVEAQNL 257


>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 316 FLCNENQILIL-DYPVRSLNRSLS*FHNRLV 405
           F C  +Q+L+  D  V SLN+ ++ FH +L+
Sbjct: 245 FACRSSQLLVSEDNVVSSLNKLINDFHGKLI 275


>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 268 HFYNLFVYKHVTIYLHFLCNENQILILDYPVRS 366
           H  N+F+Y+H  + + FL  +  +   D P++S
Sbjct: 358 HLENVFLYRHYRVCVGFLNKQIYVFSSDEPLKS 390


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 451  IFFLYHFVKEFMKLKGLDDYEIMIMIDLVIEQGNLK 344
            I ++ H + EF KLKGLD  E++ ++  V  QG L+
Sbjct: 1513 IGYIIHNLGEF-KLKGLDTTEMISLVYPVQLQGRLE 1547


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 568  LNGKCRAEHKMNLRVASTRRF 630
            L  KCR EH + L +A +++F
Sbjct: 1109 LQSKCRREHSLRLDLAFSKKF 1129


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 443 EKYNVYQMSRILIQQLYVISNFKLSISSCCVCP 541
           E +   +M  +L  +LY ISN  LSI+   + P
Sbjct: 410 EDFTYQRMKTVLDDELYTISNTNLSITDDLLPP 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,559
Number of Sequences: 5004
Number of extensions: 57658
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)