Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J22
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0056 + 12955832-12956410,12957398-12957499                       29   2.9  
07_01_1085 + 9890369-9892114,9892213-9892731                           28   8.8  
07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           28   8.8  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    28   8.8  
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368...    28   8.8  

>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 393 WYMIEEYGRRKHVAPTPGDW 334
           W ++ + GRR+HV P  G+W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 549 PKRALLSFSVTGATFRLPLTYSFRILSI 632
           P  A+LSFSVT  TFRL  +  F++  +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282


>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 549 PKRALLSFSVTGATFRLPLTYSFRILSI 632
           P  A+LSFSVT  TFRL  +  F++  +
Sbjct: 255 PHAAILSFSVTEETFRLVRSPPFQVSGV 282


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 578 HRCHFQTSSNVFIPYSIHS--RYSTHPSQHSHLCC 676
           H CH    S+   P ++HS   ++ H  +H H+ C
Sbjct: 849 HACHGHEHSHCEEPVALHSTGEHACHEHEHEHIHC 883


>06_01_0510 +
           3681369-3681645,3682825-3682886,3683016-3683165,
           3683776-3683952,3684496-3684711,3684802-3686480,
           3686602-3686667,3686753-3686822,3686909-3687547
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 515 IFIPSHHMSIPSQTCTPQLLCHRCHFQTSSNVFIPYSIHSRYSTHPSQHSHLCCM 679
           I++P  +  + S     + +  RC  + SS V  P S+ S+      +HS L CM
Sbjct: 182 IWVPPIYRRLLSVDKAERDMAERCLIKVSSVVLPPQSLLSKAIASDLEHSLLSCM 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,739,845
Number of Sequences: 37544
Number of extensions: 348136
Number of successful extensions: 897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)