Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_J20
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa... 88 9e-19
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ... 29 0.56
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M... 29 0.56
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 27 1.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.0
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 25 5.2
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 5.2
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 25 5.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 5.2
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 5.2
>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
L22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 87.8 bits (208), Expect = 9e-19
Identities = 45/106 (42%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Frame = -1
Query: 337 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADIPFS 161
K+ ID T D I DV FEKYL + +KV+GKT NL + VVV+R+ +K+A+ A I FS
Sbjct: 11 KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70
Query: 160 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADSDNED 23
RDWLRVV++ YELRY+N+ +D E+
Sbjct: 71 GRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNVVVGNDEEE 116
>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 167 RNVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 289
R + G+S F ++P + IC L V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340
>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 353 LDAFAADFATLHSFFASLLVQLGFLS 430
+D + DFAT H+ + + L +GFLS
Sbjct: 87 IDLYILDFATQHNLYVASLRNMGFLS 112
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 103 WLRVVASAHDAYELRYFNINADSDNEDNEDKLFI 2
+L V ++ A+ L YF I A+S E +ED LFI
Sbjct: 1024 FLSTVVNSFSAFALVYFAILANSLLEPSEDILFI 1057
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = -1
Query: 337 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 227
K DC + + ++ + N +K + +HV E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 221 SRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 111
SR R + + ++ R SF +VPE + TLP+ F
Sbjct: 135 SRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 270 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 398
++ + ++ G +++I ++F L L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = -1
Query: 256 VKVEGKTNNLSNHVVVARDKTKVAITADIP 167
+K+ G NNL++++ + +T++ + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 292 DVGNFEKYLKEHVKVEGKTNNLSNH 218
+ GN +KY + ++KV GK ++ H
Sbjct: 955 EAGNLKKYDQPNLKVSGKNDSFVTH 979
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 512 RPMHFAVFTVTALHVFVCHN 453
+PM+F T+ A HVF+ N
Sbjct: 164 KPMYFRFLTLMAWHVFISEN 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,193
Number of Sequences: 5004
Number of extensions: 33392
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -