Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_J19
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 144 9e-36
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 126 3e-30
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 68 1e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 68 2e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 68 2e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 65 8e-12
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 63 3e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 63 3e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 63 3e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 63 4e-11
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 3e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 56 7e-09
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 7e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 3e-08
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 53 5e-08
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 50 4e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 1e-06
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 45 1e-05
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 42 7e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 39 6e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 39 8e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 38 0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 38 0.002
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.024
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 34 0.024
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 33 0.042
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 32 0.073
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 144 bits (350), Expect = 9e-36
Identities = 70/112 (62%), Positives = 84/112 (75%)
Frame = -2
Query: 720 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 541
RDFTVS+MHGDMDQ +R+ +M +FRTGSSR+LITTDLLARGIDVQQVS VINYDLP+NRE
Sbjct: 281 RDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRE 340
Query: 540 NYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 385
NY INFVT D R +++IE FY+T I EMP ++A+LI
Sbjct: 341 NYIHRIGRGGRFGRKGVSINFVTNDDVRMMREIEQFYNTHIEEMPMNIADLI 392
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 126 bits (304), Expect = 3e-30
Identities = 61/111 (54%), Positives = 78/111 (70%)
Frame = -2
Query: 717 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 538
+FTV++MHG+M Q+ER+ IM+ FR G+SRVLI TD+ ARGIDVQQVS VINYDLP+NREN
Sbjct: 284 NFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANREN 343
Query: 537 YXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 385
Y INFVT D R L+DIE +Y T I EMP ++ +++
Sbjct: 344 YIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQYYSTVIDEMPMNIGDMV 394
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 68.1 bits (159), Expect = 1e-12
Identities = 36/111 (32%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Frame = -2
Query: 711 TVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNR---- 544
TV+ + G+++ +R+ IM FR G+S+VL+TT+++ARGIDV QV+ V+NYD+P ++
Sbjct: 378 TVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRP 437
Query: 543 --ENYXXXXXXXXXXXXXXXXINFVTEADR-RALKDIEDFYHTSIVEMPSD 400
+ Y INFV + + I++++ I +P+D
Sbjct: 438 DPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 488
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 67.7 bits (158), Expect = 2e-12
Identities = 40/111 (36%), Positives = 54/111 (48%)
Frame = -2
Query: 696 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXX 517
H M Q R + FR G R L+ +DLL RGID+Q V+ VIN+D P N E Y
Sbjct: 312 HAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 371
Query: 516 XXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI*GAYIFP 364
I+F++ ADR L IE+ T I +P + + Y+FP
Sbjct: 372 SGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPPSIDPSL---YVFP 419
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 67.7 bits (158), Expect = 2e-12
Identities = 27/56 (48%), Positives = 41/56 (73%)
Frame = -2
Query: 702 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
A+HGD Q ER+ ++ +FRTG S +++ TD+ +RGIDV+ ++ V NYD P N E+Y
Sbjct: 398 AIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDY 453
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 65.3 bits (152), Expect = 8e-12
Identities = 38/107 (35%), Positives = 53/107 (49%)
Frame = -2
Query: 708 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXX 529
V +HG++ Q +RE + +FR G VLI TDLLARGID V VIN+D P + +Y
Sbjct: 315 VGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
Query: 528 XXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANL 388
+ F T+ D +K I +S E+P+ V L
Sbjct: 375 RIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMAL 421
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/111 (27%), Positives = 55/111 (49%)
Frame = -2
Query: 720 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 541
R +T +++HG DQ +R+ + ++ G VLI T ++ARG+DV+ + V+NYD P++ E
Sbjct: 691 RGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHME 750
Query: 540 NYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANL 388
+Y + F+T + DI S +P ++ L
Sbjct: 751 DYVHRVGRTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTL 801
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 63.3 bits (147), Expect = 3e-11
Identities = 33/102 (32%), Positives = 55/102 (53%)
Frame = -2
Query: 717 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 538
+ V+ +H +M QRER + +FR ++++L+ TD+ +RG+D+ V VIN+DLP + ++
Sbjct: 282 ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDD 341
Query: 537 YXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVE 412
Y I+ VTE D + IED T + E
Sbjct: 342 YIHRVGRTARAGRSGESISIVTERDVDLVHAIEDRVGTKLSE 383
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 63.3 bits (147), Expect = 3e-11
Identities = 25/61 (40%), Positives = 44/61 (72%)
Frame = -2
Query: 717 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 538
+F +++HGD QRERE + FR+G + +++ T + +RG+D+ V+ VINYDLP++ ++
Sbjct: 454 NFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDD 513
Query: 537 Y 535
Y
Sbjct: 514 Y 514
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Frame = -2
Query: 717 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 538
+F +HG + Q ER + F+ R+ + TD+ RGID+++V+ VINYD+P + ++
Sbjct: 319 NFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDS 378
Query: 537 YXXXXXXXXXXXXXXXXINF-VTEADRRALKDIEDFYHTSIVEMPSDV 397
Y I F +E D + L I++ + +I E+P ++
Sbjct: 379 YLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEI 426
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/86 (31%), Positives = 41/86 (47%)
Frame = -2
Query: 699 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXX 520
+HG + Q +R + FR G L+ TD+ +RGID++ + VINY+ P+ E Y
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 519 XXXXXXXXXXXINFVTEADRRALKDI 442
I E DR+ LK +
Sbjct: 594 RTARAGRSGRAITLAGEGDRKVLKGV 619
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 55.6 bits (128), Expect = 7e-09
Identities = 22/60 (36%), Positives = 38/60 (63%)
Frame = -2
Query: 714 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
F+ +HG + Q R + +F++G+ L+ TD+ ARG+D+ V VINYD+P++ + Y
Sbjct: 310 FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAY 369
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 55.6 bits (128), Expect = 7e-09
Identities = 25/62 (40%), Positives = 36/62 (58%)
Frame = -2
Query: 720 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 541
R + V +HGDM Q R + F++G VL+ TD+ ARG+D+ +V VIN P E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 540 NY 535
+Y
Sbjct: 499 DY 500
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 53.6 bits (123), Expect = 3e-08
Identities = 29/106 (27%), Positives = 50/106 (47%)
Frame = -2
Query: 714 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
++VS ++G +DQ R + FR G + +L+ TD+ +RGID+ ++ VINYD P + +
Sbjct: 371 YSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVF 430
Query: 534 XXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDV 397
+ V D L D++ F + +V V
Sbjct: 431 VHRVGRTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQV 476
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 52.8 bits (121), Expect = 5e-08
Identities = 21/55 (38%), Positives = 35/55 (63%)
Frame = -2
Query: 699 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
+HG Q +RE + Q R ++ +L+ TD+ RGID+ VS V+NY++ + E+Y
Sbjct: 546 LHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDY 600
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/62 (37%), Positives = 36/62 (58%)
Frame = -2
Query: 720 RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 541
+ F+ + + ER+ I+ +F TG +L+ +DL+ARGIDV VINYD P +
Sbjct: 460 QSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVR 519
Query: 540 NY 535
+Y
Sbjct: 520 SY 521
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -2
Query: 699 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
+H +DQ++R + +F+ VL+ TD+ ARGID+ V+ VI+Y +P + Y
Sbjct: 419 LHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMY 473
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Frame = -2
Query: 708 VSAMHGDMDQREREVIMRQFRTGS---SRVLITTDLLARGIDVQQVSCVINYDLPSNREN 538
V +HG + Q+ R + F + S +L+ TD+ ARG+D+ V V+ YD P + ++
Sbjct: 470 VYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDD 529
Query: 537 YXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 385
Y I F+ + + ++ +I+E P+ + L+
Sbjct: 530 YLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSANILEQPNGPSGLL 580
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 42.3 bits (95), Expect = 7e-05
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 717 DFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNREN 538
D V +HG Q+ R +F +L+ T++ ARG+D+ V ++ YD P + +
Sbjct: 360 DLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRD 419
Query: 537 Y 535
Y
Sbjct: 420 Y 420
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = -2
Query: 699 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
+H + +R I FR S +L TD++ARG+D ++ V+ PSN ++Y
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDY 377
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = -2
Query: 714 FTVSAMHGDMDQREREVIMRQFRTGSSR-VLITTDLLARGIDVQQVSCVINYDLPSNREN 538
F + A+HG Q R +F+ + + VL TTD+ +RG+D+ V V+ D P + ++
Sbjct: 283 FEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKS 342
Query: 537 Y 535
+
Sbjct: 343 F 343
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 699 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
+HG Q R + +F + VL TD++ARG+D V VI D P + + Y
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTY 369
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 39.1 bits (87), Expect = 6e-04
Identities = 13/25 (52%), Positives = 22/25 (88%)
Frame = -2
Query: 609 LARGIDVQQVSCVINYDLPSNRENY 535
+ARG+D + V+CV+N+D+PSN ++Y
Sbjct: 386 VARGLDFENVACVLNFDMPSNTKSY 410
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -2
Query: 696 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
H +++ ER+ I ++++GS ++++ T G+D V VI++ P + E Y
Sbjct: 774 HAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGY 827
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 708 VSAMHGDMDQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
V+ GD+ ER++ FR G +R++I T GI+ V V++Y LP++ +Y
Sbjct: 1446 VTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.5 bits (83), Expect = 0.002
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = -2
Query: 708 VSAMHGDMDQREREVIMRQFR--TGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 535
V+ GD+ ER++ FR G +R++I T GI+ V V++Y LP++ +Y
Sbjct: 1446 VTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDY 1505
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 33.9 bits (74), Expect = 0.024
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 702 AMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 568
A+ G+ + ERE +++ FR VL+ +L G D+ + C++
Sbjct: 294 ALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 33.9 bits (74), Expect = 0.024
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = -2
Query: 705 SAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 547
SA M+Q +++ + QFR G L+ T + G+D+ +I YD S+
Sbjct: 509 SAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSS 561
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 33.1 bits (72), Expect = 0.042
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -2
Query: 687 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 559
M Q+ + ++QF+ G LI T + G+D+ +V +I YD
Sbjct: 476 MSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 32.3 bits (70), Expect = 0.073
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 687 MDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 556
M R ++ + +F+TG VLI T + GIDV + VI +++
Sbjct: 407 MTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNI 450
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,977
Number of Sequences: 5004
Number of extensions: 61963
Number of successful extensions: 146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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