Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J17
         (684 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           27   0.17 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.2  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   4.7  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   4.7  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.7  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.7  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 202 EMFLETIVKETYAFTSSNKRKVISKKDL 119
           ++FLE ++++   +T   KRK ++  D+
Sbjct: 60  KVFLENVIRDAVTYTEHTKRKTVTAMDV 87


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 230 IARYNIYIWVHFHNVFNSRYRKLCR 304
           I  Y IYIW       + ++RKL R
Sbjct: 543 IPGYMIYIWFTTSGTISEKFRKLIR 567


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 230 IARYNIYIWVHFHNVFNSRYRKLCR 304
           I  Y IYIW       + ++RKL R
Sbjct: 596 IPGYMIYIWFTTSGTISEKFRKLIR 620


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 56  YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 115

Query: 349 EEQV 338
            EQ+
Sbjct: 116 IEQI 119


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 289 YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 348

Query: 349 EEQV 338
            EQ+
Sbjct: 349 IEQI 352


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 14/64 (21%), Positives = 26/64 (40%)
 Frame = -3

Query: 529 HRKYKPSSLQNMSEEECHEDVDISDITEHSESYLENEHLKFALTEATEADNNKLEFELNS 350
           +RKY+ +S +        E      I  ++ S   N +         + + NKL + +N 
Sbjct: 289 YRKYRETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNINY 348

Query: 349 EEQV 338
            EQ+
Sbjct: 349 IEQI 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,785
Number of Sequences: 438
Number of extensions: 3167
Number of successful extensions: 18
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)