Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J14
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   200   8e-52
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   200   8e-52
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL132872-1|CAB60760.1|  180|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z54216-3|CAA90944.2|  337|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical...    27   9.5  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  200 bits (488), Expect = 8e-52
 Identities = 90/148 (60%), Positives = 112/148 (75%)
 Frame = -3

Query: 595 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 416
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 415 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 236
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 235 XXXXXVFCLKPGRNYCHVGRLSHEIGWK 152
                 F L+P R +C VGRLSHE+GW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 147 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQ 4
           +DVV KLE KRK K       +KK+ ++   A +  +     +  II+
Sbjct: 150 QDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIE 197


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  200 bits (488), Expect = 8e-52
 Identities = 90/148 (60%), Positives = 112/148 (75%)
 Frame = -3

Query: 595 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 416
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 415 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 236
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 235 XXXXXVFCLKPGRNYCHVGRLSHEIGWK 152
                 F L+P R +C VGRLSHE+GW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 147 RDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSKATTPFTTIIQ 4
           +DVV KLE KRK K       +KK+ ++   A +  +     +  II+
Sbjct: 150 QDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIE 197


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 28/77 (36%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 404 HVAPLTQE*HKLEFVPKEVARD-IDLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYG 580
           HVAP      KLE VP     D +   A N     P E  L DD      Q T+A  H G
Sbjct: 208 HVAPRK----KLENVPASSETDKVVEKAVNPIKKEPPEAWLRDD---KDVQSTSAASHSG 260

Query: 581 LIAKARHFHNETEKQFI 631
            +A     H ETE+ F+
Sbjct: 261 PVAMKMEEHEETEEDFL 277


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 165 KLDGNXRDVVRKLEDKRKGKAVKRVAYEKKLKRI-TKDAGEKVSK 34
           K+D +  +    LE KRK  A+ R  ++ K+ +I ++D  EK+ K
Sbjct: 173 KVDSHNSEKKNLLEKKRKDLAIARKMHKLKISKILSEDHSEKMKK 217


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/48 (29%), Positives = 18/48 (37%)
 Frame = +1

Query: 166 HGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 309
           H     H   +G V  R H E     H   +  E GTHH +     H+
Sbjct: 389 HHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435


>AL132872-1|CAB60760.1|  180|Caenorhabditis elegans Hypothetical
           protein Y116F11A.1 protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 673 TASTYLIRLTIGNLNELLFRFVVKMTGFSNKAI-VIDGR 560
           T  T+LI+L   ++N  + + VV MTG + KA   I GR
Sbjct: 33  TGKTFLIKLIENSMNRSVRKRVVLMTGSTGKAAKAIGGR 71


>Z54216-3|CAA90944.2|  337|Caenorhabditis elegans Hypothetical
           protein T24H10.4 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 132 YEQHHGYFHPISWDSLPT*Q 191
           YE+H+ YF  I++D+LP  Q
Sbjct: 228 YERHYAYFKMITFDNLPAKQ 247


>AL033514-25|CAA22109.1|  570|Caenorhabditis elegans Hypothetical
           protein Y75B8A.25 protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -1

Query: 165 KLDGNXRDVVRKLEDKRKGKAVKRVAYEKKLKRITKDAGEKVSK 34
           KLD + +D V + ED  + KA++R  + +K  +  +D  + +S+
Sbjct: 38  KLDRDFQDSVTRKEDYMREKAIRRQKHSEKFDKKFEDLVKAMSE 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,096
Number of Sequences: 27780
Number of extensions: 326837
Number of successful extensions: 847
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)