Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J12
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          62   1e-10
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       55   8e-09
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    26   4.5  

>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/50 (52%), Positives = 35/50 (70%)
 Frame = -1

Query: 488 KKL*RNXPGTSAVLVRRHGVYVWGDTWQQAKTMTECYDYLFEMAVEMKKL 339
           KK+    P T AVL+R HGV  WG TW+++KT  ECY+YLFE+  ++K L
Sbjct: 143 KKVIELYPQTCAVLIRGHGVIGWGATWEKSKTQMECYEYLFELDYKLKTL 192



 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = -3

Query: 690 AGAVIHTHSPHAVRCTLLYDKVFEITHQEMIKGI-KDTSLGRYLRYDEKLVVPIIENTPF 514
           A A I++ S  AV  ++ Y++ F    +EMIKGI K      YL   + L VPII N   
Sbjct: 77  AVACIYSTSVAAVGASM-YNEKFTTQSKEMIKGIPKGNPSAGYLCCFDTLEVPIIHNGD- 134

Query: 513 EKDLAGSLEEALKEXP 466
            K +   L++ ++  P
Sbjct: 135 SKTILDELKKVIELYP 150


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 21/43 (48%), Positives = 29/43 (67%)
 Frame = -1

Query: 467 PGTSAVLVRRHGVYVWGDTWQQAKTMTECYDYLFEMAVEMKKL 339
           P T AV+VR HG+Y WGDTWQ  K  TE  ++LF+  +  ++L
Sbjct: 175 PDTCAVIVRDHGIYCWGDTWQDTKMNTEAVEFLFQAYLRRRRL 217


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 657 AVRCTLLYDKVFEITHQEMIKGIKDTSLGRYLR 559
           AVRC     K     H+E IKG+K+  L   LR
Sbjct: 193 AVRCIRFATKYDFNIHEETIKGLKNPELHERLR 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,365
Number of Sequences: 5004
Number of extensions: 50688
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)