Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J12
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical pr...    68   6e-12
AL031620-3|CAA20928.1|  310|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    29   3.2  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      29   3.2  
Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z49131-4|CAA88977.2|  263|Caenorhabditis elegans Hypothetical
           protein ZC373.5 protein.
          Length = 263

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 31/70 (44%), Positives = 42/70 (60%)
 Frame = -1

Query: 473 NXPGTSAVLVRRHGVYVWGDTWQQAKTMTECYDYLFEMAVEMKKLGLDPTFNPETAQNGQ 294
           N P   AVLVR HG++VWG TW+  K MTEC DYL E+++EM K  + P  N E  +   
Sbjct: 188 NYPQAIAVLVRNHGLFVWGPTWESTKIMTECIDYLLELSIEMLKNNI-PLVNEEAFEKED 246

Query: 293 KTS*LLQKLL 264
             S  ++ L+
Sbjct: 247 NLSDKMRTLM 256



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -3

Query: 681 VIHTHSPHAVRCT-LLYDKVFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKD 505
           VIHTHS  A   T L+   VFEI+HQE IKGI D   G+ L+Y + L +PII+N P E  
Sbjct: 118 VIHTHSKCANLITQLIKSNVFEISHQEYIKGIYDPFSGKALKYSDTLTIPIIDNMPSESQ 177

Query: 504 LAGSLEEALKEXP 466
           L   +   L+  P
Sbjct: 178 LLEPIRGVLENYP 190


>AL031620-3|CAA20928.1|  310|Caenorhabditis elegans Hypothetical
           protein C18B12.3 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 351 FHCHLE*VVIAFRHCFSLLPRITPYVHSVSSDKHRTSPRXIPLKLLPD 494
           F C      I+  H    LP+++PY H  + D H  SP      ++PD
Sbjct: 96  FDCPTTVSPISSAHETGQLPQLSPYDHIGNQDPHMFSPHAYGNSMIPD 143


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 435 VSSDKHRTSPRXIPLKLLPDYRLDLFQKACF-LLLGLLISHHNGDSGLGM 581
           +S D   + P  I L   P+YR+D ++  C+ L       H   D+G+ +
Sbjct: 180 MSKDSQISRPEAIRLNNNPNYRIDYYENNCYNLSESFTFKHECRDNGISV 229


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 435 VSSDKHRTSPRXIPLKLLPDYRLDLFQKACF-LLLGLLISHHNGDSGLGM 581
           +S D   + P  I L   P+YR+D ++  C+ L       H   D+G+ +
Sbjct: 180 MSKDSQISRPEAIRLNNNPNYRIDYYENNCYNLSESFTFKHECRDNGISV 229


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 435 VSSDKHRTSPRXIPLKLLPDYRLDLFQKACF-LLLGLLISHHNGDSGLGM 581
           +S D   + P  I L   P+YR+D ++  C+ L       H   D+G+ +
Sbjct: 180 MSKDSQISRPEAIRLNNNPNYRIDYYENNCYNLSESFTFKHECRDNGISV 229


>Z98866-5|CAB11548.1|  436|Caenorhabditis elegans Hypothetical
           protein Y49E10.4 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -3

Query: 633 DKVFEITHQEMIKGIKDTSLGRYLRYDEKLVVPIIENTPFEKDLAGSLEEALKE--XPWD 460
           D V +   + + + +K  S  +  + D+K  V ++ ++ F+K +  S E  + E   PW 
Sbjct: 125 DAVKKSIEKSLEQRLKGKSSEKSKKSDKKGKVVVLTDSNFDKLVLNSKEPWMVEFFAPW- 183

Query: 459 *CGACQK 439
            CG CQK
Sbjct: 184 -CGHCQK 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,658
Number of Sequences: 27780
Number of extensions: 286594
Number of successful extensions: 653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)