Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_J10
(783 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 294 4e-80
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 294 6e-80
11_01_0710 - 5830475-5830595,5831498-5834124 32 0.59
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 3.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 29 4.2
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 7.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 294 bits (722), Expect = 4e-80
Identities = 143/234 (61%), Positives = 171/234 (73%), Gaps = 1/234 (0%)
Frame = -1
Query: 783 YCSVVRVIAHXXXXXXXXXXXK-AHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 607
Y S+VRVIAH K AH+MEIQ+NGGTI DKV + + EK IPVD+VF +D
Sbjct: 156 YASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKD 215
Query: 606 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 427
EMID I +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GY
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGY 275
Query: 426 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 247
HHRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIK
Sbjct: 276 HHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIK 329
Query: 246 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAL 85
GCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K ++
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQSV 383
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 294 bits (721), Expect = 6e-80
Identities = 144/236 (61%), Positives = 169/236 (71%), Gaps = 1/236 (0%)
Frame = -1
Query: 783 YCSVVRVIAHXXXXXXXXXXXK-AHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQD 607
Y SVVRVI H K AH+MEIQ+NGGTI DKV + + EK IPVD+VF +D
Sbjct: 156 YASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVDAVFQKD 215
Query: 606 EMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGY 427
EMID I +RW +LPRKTH+GLRKVACIGAWHP+RVS+TVARAGQ GY
Sbjct: 216 EMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGY 275
Query: 426 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 247
HHRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFPHYG V D++MIK
Sbjct: 276 HHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIK 329
Query: 246 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAALHG 79
GCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K G
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFG 385
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 593 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 712
+S+ISSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -1
Query: 714 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 622
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 327 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 232
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 102 ADKAALHGYTQEGSXSRRSCGYHHPSGCCAALSV 1
A +A + Y ++G +RR GY HP+ AL V
Sbjct: 58 AAQAMISAYDKQGFKNRRGPGYRHPAAELTALRV 91
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -1
Query: 471 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 322
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 321 SEKSITPMGGFPHYGEVNN 265
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,935,065
Number of Sequences: 37544
Number of extensions: 467677
Number of successful extensions: 1026
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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