Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J10
         (783 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   399   e-111
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   399   e-111
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   399   e-111
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   399   e-111
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   399   e-111

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  399 bits (983), Expect = e-111
 Identities = 187/235 (79%), Positives = 198/235 (84%)
 Frame = -1

Query: 783 YCSVVRVIAHXXXXXXXXXXXKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDE 604
           YC V+RVIAH           KAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDE
Sbjct: 167 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 226

Query: 603 MIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYH 424
           MIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYH
Sbjct: 227 MIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYH 286

Query: 423 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 244
           HRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKG
Sbjct: 287 HRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKG 346

Query: 243 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAALHG 79
           CC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK A  G
Sbjct: 347 CCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 401


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  399 bits (983), Expect = e-111
 Identities = 187/235 (79%), Positives = 198/235 (84%)
 Frame = -1

Query: 783 YCSVVRVIAHXXXXXXXXXXXKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDE 604
           YC V+RVIAH           KAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDE
Sbjct: 156 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 215

Query: 603 MIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYH 424
           MIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYH
Sbjct: 216 MIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYH 275

Query: 423 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 244
           HRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKG
Sbjct: 276 HRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKG 335

Query: 243 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAALHG 79
           CC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK A  G
Sbjct: 336 CCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 390


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  399 bits (983), Expect = e-111
 Identities = 187/235 (79%), Positives = 198/235 (84%)
 Frame = -1

Query: 783 YCSVVRVIAHXXXXXXXXXXXKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDE 604
           YC V+RVIAH           KAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDE
Sbjct: 143 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 202

Query: 603 MIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYH 424
           MIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYH
Sbjct: 203 MIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYH 262

Query: 423 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 244
           HRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKG
Sbjct: 263 HRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKG 322

Query: 243 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAALHG 79
           CC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK A  G
Sbjct: 323 CCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 377


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  399 bits (983), Expect = e-111
 Identities = 187/235 (79%), Positives = 198/235 (84%)
 Frame = -1

Query: 783 YCSVVRVIAHXXXXXXXXXXXKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDE 604
           YC V+RVIAH           KAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDE
Sbjct: 143 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 202

Query: 603 MIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYH 424
           MIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYH
Sbjct: 203 MIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYH 262

Query: 423 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 244
           HRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKG
Sbjct: 263 HRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKG 322

Query: 243 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAALHG 79
           CC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK A  G
Sbjct: 323 CCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 377


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  399 bits (983), Expect = e-111
 Identities = 187/235 (79%), Positives = 198/235 (84%)
 Frame = -1

Query: 783 YCSVVRVIAHXXXXXXXXXXXKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDE 604
           YC V+RVIAH           KAH+MEIQLNGG+IEDKVKWAREHLEKPI V +VF QDE
Sbjct: 156 YCKVIRVIAHSQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDE 215

Query: 603 MIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQKGYH 424
           MIDC+           TSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS TVARAGQKGYH
Sbjct: 216 MIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYH 275

Query: 423 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKG 244
           HRTE+NKKIYRIG GIH KDGKVIKNNASTEYDL++KSITPMGGFPHYGEVNNDFVMIKG
Sbjct: 276 HRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKG 335

Query: 243 CCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAALHG 79
           CC+G KKRIITLRKSL  HTKR+ALE+I LKFIDTSSK GHGRFQTPADK A  G
Sbjct: 336 CCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMG 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,820,157
Number of Sequences: 53049
Number of extensions: 775955
Number of successful extensions: 1895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1895
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3613676352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)