Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J09
         (747 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   1.9  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   1.9  
U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase...    23   7.6  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
 Frame = +2

Query: 527 GWTSSQPTRC*VVTGSYRH--LQHKCATHIVTTAAPPFKPKR----ITASRQK*AGGGGT 688
           G  + Q  RC  +    +H   Q     H+  TA   + P+R    I   R   A GGG+
Sbjct: 132 GCNAGQTNRCSSLKDLIKHGETQAVIEIHLENTAFNAYDPERYGGRIICERTLNASGGGS 191

Query: 689 YPRGLTRGPTTS 724
           Y      G T S
Sbjct: 192 YKLKNEHGQTVS 203


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 612  LQRLPRPSNRNALLL---HGRNRQGAVVPTRADS 704
            LQRL R   R   L    HGRNR+    P+ AD+
Sbjct: 1143 LQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADT 1176


>U89800-1|AAD03793.1|  260|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 260

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -3

Query: 445 SSLPEMKH*NFSIVMWGCRDW 383
           +++  +KH    +++WGC  W
Sbjct: 99  NTIKTLKHGGGHVMVWGCFSW 119


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 714,730
Number of Sequences: 2352
Number of extensions: 13579
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)