Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J07
         (722 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.     221   2e-59
Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.       177   2e-46
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   5.5  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   9.6  

>AY035716-1|AAK61362.1|  136|Anopheles gambiae histone 3A protein.
          Length = 136

 Score =  221 bits (540), Expect = 2e-59
 Identities = 108/108 (100%), Positives = 108/108 (100%)
 Frame = -1

Query: 719 SAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSA 540
           SAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSA
Sbjct: 29  SAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSA 88

Query: 539 AIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 396
           AIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 89  AIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136


>Y09952-1|CAA71083.1|  115|Anopheles gambiae histone H3 protein.
          Length = 115

 Score =  177 bits (432), Expect = 2e-46
 Identities = 85/89 (95%), Positives = 88/89 (98%)
 Frame = -1

Query: 719 SAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSA 540
           SAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+
Sbjct: 27  SAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS 86

Query: 539 AIGALQEASEAYLVGLFEDTNLCAIHAKR 453
           A+ ALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 87  AVMALQEASEAYLVGLFEDTNLCAIHAKR 115


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 540 GRLETQISFEILSDFSHKTLERQLTDKQLSRLLITTNFTKGHCTRA 677
           G + T  +F +LSD +   L    TD QLS + +  N       +A
Sbjct: 803 GTITTGSAFVLLSDKTSLRLITTTTDHQLSEVELRPNLPANFVVKA 848


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +3

Query: 510 LACLLESSDGGRLETQISFEILS--DFSHKTL-ERQLTDKQLSRLLITTNFTKGHCTRAI 680
           L+C  ++  G R +T+     +S  DF    L E  L D   S LL   NF+   C R++
Sbjct: 80  LSCYYQNVRGLRTKTKEFHLAVSEADFDLIALTETWLVDNIPSALLFNNNFSVYRCDRSL 139

Query: 681 T 683
           +
Sbjct: 140 S 140


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 699,026
Number of Sequences: 2352
Number of extensions: 12350
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73597131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)