Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_J06
(498 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal pr... 91 4e-19
Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical pr... 49 2e-06
Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical pr... 31 0.61
U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical p... 27 10.0
Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical p... 27 10.0
Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical p... 27 10.0
>AF003151-13|AAK18907.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 24.1 protein.
Length = 159
Score = 91.1 bits (216), Expect = 4e-19
Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 3/98 (3%)
Frame = -1
Query: 459 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 280
MK+ C YSGYKI+PGHGK +V+ DGK FL+ K +RRNPR + WTVLYR K K
Sbjct: 1 MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60
Query: 279 K---GQEEEXXXXXXXXXXXXXXAIVGASLSDIMAKRN 175
K GQE+ A+ G SL I+AKRN
Sbjct: 61 KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRN 98
>Z75525-5|CAA99764.1| 162|Caenorhabditis elegans Hypothetical
protein C03D6.8 protein.
Length = 162
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = -1
Query: 459 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 289
M+I C + IYPGHG V+ D F F S+C ++NPRK+ +T RR
Sbjct: 1 MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57
>Z82263-6|CAJ76936.1| 383|Caenorhabditis elegans Hypothetical
protein C47A4.2c protein.
Length = 383
Score = 30.7 bits (66), Expect = 0.61
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 119 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 298
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 125 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 184
Query: 299 RTVHVTLRGFLLIKWAASHFEFR 367
+V+ L S F++R
Sbjct: 185 YKYYVSKGNRLRAAQEQSSFDYR 207
>Z82263-3|CAB62793.2| 451|Caenorhabditis elegans Hypothetical
protein C47A4.2b protein.
Length = 451
Score = 30.7 bits (66), Expect = 0.61
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 119 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 298
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 193 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 252
Query: 299 RTVHVTLRGFLLIKWAASHFEFR 367
+V+ L S F++R
Sbjct: 253 YKYYVSKGNRLRAAQEQSSFDYR 275
>Z82263-2|CAE46670.1| 445|Caenorhabditis elegans Hypothetical
protein C47A4.2a protein.
Length = 445
Score = 30.7 bits (66), Expect = 0.61
Identities = 20/83 (24%), Positives = 36/83 (43%)
Frame = +2
Query: 119 SFAALMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPFLNLRLY 298
S A ++ ++C TS + + ++A T+A F + L+ F C SW F +
Sbjct: 187 SNAVVIGTNICGTFTSVLAIVATLAFSTQAETVALIYFGISLLILFVCLVSWWFCKKMDF 246
Query: 299 RTVHVTLRGFLLIKWAASHFEFR 367
+V+ L S F++R
Sbjct: 247 YKYYVSKGNRLRAAQEQSSFDYR 269
>U23147-4|AAC46689.1| 464|Caenorhabditis elegans Hypothetical
protein C18H9.5 protein.
Length = 464
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 131 LMACSLCALRTSGFILRLAIMSLSEAPTIARWNFWVLLVRFFACSSSWPF 280
+MA + S FIL + I + + A W+ + L V FF ++ PF
Sbjct: 397 IMAVISMSSWVSAFILPIVIGVICPTNSHAEWSRFYLFVAFFVVCTNLPF 446
>Z46267-15|CAI79255.1| 1100|Caenorhabditis elegans Hypothetical
protein F49E2.5j protein.
Length = 1100
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 301 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 215
PVQ QV++ + + SK+T + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571
>Z46267-12|CAD45595.2| 528|Caenorhabditis elegans Hypothetical
protein F49E2.5g protein.
Length = 528
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 301 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 215
PVQ QV++ + + SK+T + K PT D
Sbjct: 460 PVQEQVKEQKKSKKSKKTSESESKRPTAD 488
>Z46267-11|CAA86426.1| 611|Caenorhabditis elegans Hypothetical
protein F49E2.5f protein.
Length = 611
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 301 PVQAQVQKGPRGRTSKETY*KDPKVPTCD 215
PVQ QV++ + + SK+T + K PT D
Sbjct: 543 PVQEQVKEQKKSKKSKKTSESESKRPTAD 571
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,924,786
Number of Sequences: 27780
Number of extensions: 193839
Number of successful extensions: 371
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -