Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_J04
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   2.9  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    26   3.8  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    26   3.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   8.8  

>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 151 CCNRCCRECSQLRKCCSRCCTGCSQLRK--CCNRCCTGC 261
           CC++     S+   CCS+    C   +K  CC++   GC
Sbjct: 225 CCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 199 SRCCTGCSQLRKCCNRC 249
           ++ C GC++ + CC  C
Sbjct: 67  TQICVGCARYKNCCQSC 83


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 157 NRCCRECSQLRKCCSRCCTGCSQLRKCCNRCCTGCSQLRRC*G 285
           +R C +C + +  C R    CSQ  KC  R    C   + C G
Sbjct: 96  SRFCEKCQEYK--CDRS-HHCSQCNKCILRMDHHCMWFKNCVG 135


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 166 CRECSQLRKCCSRC--CTGCSQLRKCCNRCCTG 258
           CREC +L+  C R   C  C + R   N C  G
Sbjct: 22  CRECHRLKLKCDRVWPCENCKK-RGIPNLCPNG 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 971,816
Number of Sequences: 5004
Number of extensions: 10689
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)