Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_J02
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo... 190 1e-49
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.23
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 30 0.40
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 29 0.69
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.1
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 6.4
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 26 6.4
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 6.4
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 8.5
>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 190 bits (464), Expect = 1e-49
Identities = 97/195 (49%), Positives = 129/195 (66%), Gaps = 3/195 (1%)
Frame = -1
Query: 738 VPVPVPQKRGAP-VIFAEDEEYXRGNFXKFTKLSTVFQKENGTVTAGNASTLNDGXXXXX 562
VPV VP RG P + EDEE N K + VF K NGTVTA NASTLNDG
Sbjct: 202 VPVEVPVGRGKPNKLVTEDEEPKNLNEDKLKSVRAVF-KSNGTVTAANASTLNDGASALV 260
Query: 561 XXXXXXAKRLNVKPIARIVGFADGECDPIDFPIAPAVAIPKLLEKTGVRKEDVALWEINE 382
K L +KP+A+I+G+ + DP F +P++AIPK L+ G+ V +EINE
Sbjct: 261 LMSAAKVKELGLKPLAKIIGWGEAAQDPERFTTSPSLAIPKALKHAGIEASQVDYYEINE 320
Query: 381 AFSVVAVANQKLLGLDPSKINVHGGAVSLGHPIGMSGARIVVHLCHAL--KKGEKGVASI 208
AFSVVAVAN K+LGLDP ++N++GG V++GHP+G SG+RI+ L + L K + GVA++
Sbjct: 321 AFSVVAVANTKILGLDPERVNINGGGVAMGHPLGSSGSRIICTLAYILAQKDAKIGVAAV 380
Query: 207 CNGGGGASSVMIEKM 163
CNGGGGASS++IE++
Sbjct: 381 CNGGGGASSIVIERV 395
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.23
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Frame = +2
Query: 302 TAPPCTLIFDGSNPNNF*FATATTLKASFISHNATSSFL--TPVFSNNLGMA--TAGAIG 469
+A P + S+ + A+++T +S S + TSS L + + S++L + T+ ++
Sbjct: 101 SASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLA 160
Query: 470 KSMGSHSPSANPTIRAIGLTFNLLAAS-AVINTKAAAPSFN 589
S + + SA PT A + + AAS + ++ A+ S N
Sbjct: 161 SSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLN 201
Score = 28.7 bits (61), Expect = 0.91
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Frame = +2
Query: 359 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 538
AT+++L ++ S++ATSS L N+ ATA + S + S SA + +L
Sbjct: 176 ATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSS--------SL 227
Query: 539 LAASAVINTKAAAPSFNVEALPAVTVPFSFWN--TVDNFVNXXKXPLXYSSSSANXTGAP 712
++S T A A S ++ + + + P + N T + Y++SS + P
Sbjct: 228 ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTP 287
Score = 28.7 bits (61), Expect = 0.91
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 359 ATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSANPTIRAIGLTFNL 538
+T++T +S S ATS+ TP+ S N AT+ + +S SA + N
Sbjct: 337 STSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANS 396
Query: 539 LAASAVINTKAAAPSFNVEA-LPAVTV 616
+++V +T APS+N + LP +V
Sbjct: 397 TTSTSVSST---APSYNTSSVLPTSSV 420
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 29.9 bits (64), Expect = 0.40
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = -1
Query: 447 IPKLLEKTGVRKEDVALWEINEAFSVVAVANQKLLGLDPSKINVHGGAVSL 295
+ KL +TG + ++L ++NE S KL DPS++ + G V L
Sbjct: 628 LTKLNYETGKTENRLSLLQLNEQLSCSPADRAKLTLFDPSRLLIFKGVVKL 678
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.69
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +2
Query: 344 NNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSH 487
N F F TA A N S LTPVFS + MA+A A ++ +H
Sbjct: 259 NQFSFNTAANPFAFAKKENEESKPLTPVFSFSTTMASADASKETKQTH 306
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 366 AVANQKLLGLD-PSKINVHGGAVSLGHPIGMSGARIVVHLCHALK 235
+++++ LL +D P+ + + G L + S A + VH+CHA+K
Sbjct: 194 SMSSRSLLIMDIPTTMRSNNGLSILASRLKSSEAPMHVHICHAIK 238
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +2
Query: 323 IFDGSNPNNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATAGAIGKSMGSHSPSAN 502
I+ ++ ++ +TAT +S S +++SS TP+ S+++ + + + S+ S S S++
Sbjct: 133 IYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPI-SSSITSSISSSASSSVSSSSASSS 191
Query: 503 PTI 511
+I
Sbjct: 192 GSI 194
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 51 IYKNFFYLIPHINKKIFETVY*EGTAMTILYILCYRLTF 167
IY N+ +L +INKK+ E + Y L Y L F
Sbjct: 1938 IYGNYLHLEEYINKKLLLINPNEEPDSLLFYALAYDLKF 1976
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 288 PIGMSGARIVVHLCHALKKGEKGVASICNGGGGASSVMIE 169
P G+SG I+V LC A E +I G G +S+ IE
Sbjct: 229 PKGLSGKDIIVSLCGAFNHDEVLNHAIEFYGEGLNSLSIE 268
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 203 LQIEATPFSPFFKAWH-RCTTMRAPDIPIG*PKLTAPPCTLIFDGSNPNNF 352
L +E +P PF+K WH R T+ ++ P+ + +F G NP +F
Sbjct: 285 LPLELSPGCPFYKIWHIRNTSCQSWPSPL---YVKFNGGDKLFPGDNPYSF 332
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +2
Query: 281 PIG*PKLTAPP-CTLIFDGSNPNNF*FATATTLKASFISHNATSSFLTPVFSNNLGMATA 457
P P PP C + SNP ATA + H + + +TP NN TA
Sbjct: 207 PYSSPTSYPPPLCPATYCPSNPPQLAPATAIAPSSQSSQHKSVNYSVTPSSINN---HTA 263
Query: 458 GAIGKSMGSHSPSANPTIR 514
+ ++ P PT +
Sbjct: 264 VPLSPTLAVWLPMTQPTFQ 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,469
Number of Sequences: 5004
Number of extensions: 54025
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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