Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I23
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork head/HNF-3...    29   1.6  
U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore co...    28   3.7  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z92833-5|CAK12560.1|  411|Caenorhabditis elegans Hypothetical
           protein F38A6.1c protein.
          Length = 411

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 336 ARHVKHPGHGFKGWFWA*HERCSHF--DGCR*RREKN---DETANQRKREDIN 193
           AR    PG   KG FW  HE C +   +GC  RR+K     E    RK+ + N
Sbjct: 203 ARSPDKPG---KGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNAN 252


>Z92833-4|CAK12559.1|  442|Caenorhabditis elegans Hypothetical
           protein F38A6.1b protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 336 ARHVKHPGHGFKGWFWA*HERCSHF--DGCR*RREKN---DETANQRKREDIN 193
           AR    PG   KG FW  HE C +   +GC  RR+K     E    RK+ + N
Sbjct: 234 ARSPDKPG---KGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNAN 283


>Z92833-3|CAB07378.1|  506|Caenorhabditis elegans Hypothetical
           protein F38A6.1a protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 336 ARHVKHPGHGFKGWFWA*HERCSHF--DGCR*RREKN---DETANQRKREDIN 193
           AR    PG   KG FW  HE C +   +GC  RR+K     E    RK+ + N
Sbjct: 298 ARSPDKPG---KGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNAN 347


>U51163-1|AAA96319.1|  506|Caenorhabditis elegans fork
           head/HNF-3-like protein protein.
          Length = 506

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = -1

Query: 336 ARHVKHPGHGFKGWFWA*HERCSHF--DGCR*RREKN---DETANQRKREDIN 193
           AR    PG   KG FW  HE C +   +GC  RR+K     E    RK+ + N
Sbjct: 298 ARSPDKPG---KGSFWTLHEHCGNMFENGCYLRRQKRFKVKEREPSRKKRNAN 347


>U97191-1|AAB52432.1|  805|Caenorhabditis elegans Nuclear pore
           complex protein protein11 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 428 AAVYGLEGAAVPN--DPNIFPINANSFSPASLMQGMSNIQDMASKAGFGPNMNGAAISTV 255
           A ++G  GAA P     +IF  +ANS +PA++  G S     A    FG N   A    +
Sbjct: 85  AGIFGNSGAAAPAPASTSIFGSSANSAAPATVTFGAS--APSAGAGMFGANKPAAPTGGL 142

Query: 254 VDSAGKKMT 228
             S+    T
Sbjct: 143 FGSSTSTAT 151


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +1

Query: 280 MLGPKPAFEAMSWMFDMPCIKLAGEKLLAFIGNMFGSLGTAAPSNPYTAAKIKRIIATFV 459
           ++G  PA     WMFD+ CIK   +   +  G           +N +    I   I T  
Sbjct: 721 VIGTIPAPVLFGWMFDVSCIKYQSDSCGSSSGGCL-MYSNQYLANLFLTFTISGQIITLA 779

Query: 460 IV*VYLRMF 486
           I+ V L +F
Sbjct: 780 ILIVVLMIF 788


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,545,951
Number of Sequences: 27780
Number of extensions: 226718
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)