Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I22
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    62   4e-10
11_01_0535 + 4234282-4235082                                           31   0.78 
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    28   5.5  
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813...    27   9.7  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -2

Query: 642 LGNLSIHILLKNLRPP-GTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKC 466
           + N   HILL+NLR P G    +IP+        L N V+C NYT E   WL F I T+ 
Sbjct: 231 IANFYCHILLRNLRSPSGNGGYQIPR------GFLFNIVTCANYTTEIYQWLGFNIATQT 284

Query: 465 APAGLFAAAGFYQMAVWAIGKHRNYKK 385
               +F       M  WA+GKHR  KK
Sbjct: 285 VAGYIFLVVAASIMTNWALGKHRRLKK 311


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = -2

Query: 636 NLSIHILLKNLRPPGTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPA 457
           N++    L  L+  G K  +IPK DG     L + V+CPNY  E   WL + ++     A
Sbjct: 172 NIAADRELLRLKEAG-KGYQIPK-DG-----LFDLVACPNYFGETVEWLGYALVAWTPAA 224

Query: 456 GLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGRKA 352
             F       +   A  +   Y  +F D YP  RKA
Sbjct: 225 WAFFLYTCVNLGPRARDQRLWYISKFGDKYPASRKA 260


>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 369 GSLGIPSCSCDVYRWPK 419
           G +G+ +C C++Y WP+
Sbjct: 23  GRIGVGACGCEMYVWPR 39


>05_04_0083 +
           17780665-17780764,17781070-17781124,17781193-17781313,
           17781361-17781429,17782047-17782274,17782477-17782666,
           17783303-17783694,17784380-17784427,17784816-17785400
          Length = 595

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 188 PWWVSDDILEGSGFCLFWYATXW 120
           PWW++   LEGSG    W    W
Sbjct: 35  PWWLTGHDLEGSGCVWEWGLHPW 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,750,305
Number of Sequences: 37544
Number of extensions: 317147
Number of successful extensions: 668
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)