Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I19
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces ... 123 2e-29
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p... 46 5e-06
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 2.0
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 6.1
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 25 6.1
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 25 8.1
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 8.1
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 25 8.1
>SPCC645.03c |isa1||iron-sulfur protein Isa1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 190
Score = 123 bits (296), Expect = 2e-29
Identities = 52/114 (45%), Positives = 82/114 (71%)
Frame = -2
Query: 460 RILPSRAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLD 281
R +P + + LTP AV+ +K++ KG + L++GV+Q+GC G +Y+L+Y + +K D
Sbjct: 75 RFMPRKNVIKLTPLAVEHLKKMQSSASMKGKM-LRIGVKQKGCAGQAYSLEYIEKPDKFD 133
Query: 280 EEVKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTCGCGEXFS 119
E VKQDG++II+ ++A L ++G+ MDY +D L + F+F+NPN+K TCGCGE FS
Sbjct: 134 EIVKQDGISIIVARRALLQIIGSVMDYRDDDLQSRFIFSNPNVKSTCGCGESFS 187
>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 205
Score = 45.6 bits (103), Expect = 5e-06
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
Frame = -2
Query: 436 LVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGV 257
L + SA K++++I +++ + V L+V V GC+G + D +
Sbjct: 98 LYVKDSAKKQLEKIAERKPEENSV-LRVTVDGGGCHGYQVSFRMDNKIGNADTVFVRGKA 156
Query: 256 TIIIDKKAQLTLLGTEMDYVEDKLSAEF-VFNNPNIKGTCGCGEXFSI 116
++ D + + G+E++Y + + + F + NNP K +CGC F +
Sbjct: 157 RVVADNISLPLISGSEIEYTNELIGSSFQLLNNPRAKTSCGCNVSFDV 204
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = -2
Query: 409 KVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGVTIIIDKKAQ 230
KVKE + KE V + G NGL + + +T +++ E ++ + +ID+ +
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNGLGFGITLLRTTDRVKVEGEEYSLVDLIDQPVE 345
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 502 TKIIASATVRAVKKRILPSRAALVLTPSAVKKVKEIMQKEEAKG 371
+K++ + +AVKK ++PS + PS K + + + +KG
Sbjct: 524 SKVVVPSNAKAVKKSVVPSSP---VVPSPRKATNKSLSMDVSKG 564
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 238 KAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTCGC 134
KA L G EMD V S +F+ +NPN+ T GC
Sbjct: 138 KAISVLKGHEMDIV----SLDFLPSNPNLFVTGGC 168
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 247 IDKKAQLTLLGTEMDYVEDKLSAEFV-FNNPN 155
ID+++ LTL +EMD EFV NNPN
Sbjct: 391 IDEQSILTLNNSEMDKYFQWYEKEFVEENNPN 422
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 421 SAVKKVKEIM-QKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGVTIII 245
+ +K +++IM QK V G+ G ++ LD A L +VK DG+ +I
Sbjct: 135 NGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDA-----LKSDVKLDGIVTVI 189
Query: 244 DKKAQLTLLGTEMD 203
D K +L E D
Sbjct: 190 DCKNIDNILKDESD 203
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 235 AQLTLLGTEMDYVEDKLSAEFVFNN 161
A L +LG +DYVE + SA N+
Sbjct: 1043 APLEILGQHLDYVEKRNSASLSLND 1067
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,979,644
Number of Sequences: 5004
Number of extensions: 33434
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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