Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I19
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0363 - 18006175-18006268,18006341-18006458,18007695-18007884    121   4e-28
01_01_0040 - 306124-306413,307397-307601                               94   8e-20
06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682           81   5e-16
08_02_0408 - 16829483-16829545,16830359-16830467,16830650-168308...    58   5e-09
08_02_0445 + 17218136-17218333,17219595-17219725,17219908-17220112     49   2e-06
01_07_0105 - 41104655-41104851,41105818-41107150                       29   2.7  
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140...    29   3.6  
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949...    28   6.2  
01_01_0837 + 6533838-6534356                                           28   6.2  

>12_02_0363 - 18006175-18006268,18006341-18006458,18007695-18007884
          Length = 133

 Score =  121 bits (292), Expect = 4e-28
 Identities = 59/126 (46%), Positives = 89/126 (70%), Gaps = 2/126 (1%)
 Frame = -2

Query: 493 IASATVRAVKKRILPS--RAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLS 320
           +AS+  +A+ ++  PS  + AL LT +A  +V++++   + + Y  L++GV+ RGCNGLS
Sbjct: 1   MASSVFKAMAEKAGPSVRKQALTLTDAAASRVRQLLGVRQ-RAY--LRLGVKARGCNGLS 57

Query: 319 YTLDYAKTKEKLDEEVKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTC 140
           YT++YA  K K DE V+  GV I+ID KA + ++GT+MD+++D L +EFVF NPN KG C
Sbjct: 58  YTMNYADEKGKFDELVEDKGVKILIDPKALMHVIGTKMDFIDDPLRSEFVFMNPNSKGEC 117

Query: 139 GCGEXF 122
           GCGE F
Sbjct: 118 GCGESF 123


>01_01_0040 - 306124-306413,307397-307601
          Length = 164

 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 26/134 (19%)
 Frame = -2

Query: 445 RAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQ 266
           + AL LT +A  ++++++     + Y  L++GV+ RGCNGLSYTL+YA  K K DE V+ 
Sbjct: 24  KQALALTDAAASRIRQLLSLRH-RPY--LRLGVKARGCNGLSYTLNYADEKGKFDEVVED 80

Query: 265 DGVTIIIDKKAQLTLLGTEMDYVEDKL--------------------------SAEFVFN 164
            GV ++ID KA + ++GT+MDYV+D L                           +EFVF 
Sbjct: 81  KGVKVLIDPKALMHVIGTKMDYVDDPLRFMICAQHFLLSTYYLLSLPYGGFSCRSEFVFI 140

Query: 163 NPNIKGTCGCGEXF 122
           NPN KG CGCGE F
Sbjct: 141 NPNSKGECGCGESF 154


>06_01_0338 - 2436779-2436954,2437257-2437484,2438526-2438682
          Length = 186

 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
 Frame = -2

Query: 439 ALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKL--DEEVKQ 266
           A+ LT  A+K + ++  + E    + L++GVRQ GC+G+SYT+++         D  V+ 
Sbjct: 66  AISLTEKALKHLNKM--RAERNEDLCLRIGVRQGGCSGMSYTMEFEDRSNASPDDSVVEY 123

Query: 265 DGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFVFNNPNIKGTCGCGEXFS 119
           DG  I+ D K+ L + G E+DY +  +   F F NPN   TCGCG+ F+
Sbjct: 124 DGFAIVCDPKSLLFMFGMELDYSDALIGGGFAFQNPNATKTCGCGKSFA 172


>08_02_0408 -
           16829483-16829545,16830359-16830467,16830650-16830874,
           16832033-16832046
          Length = 136

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
 Frame = -2

Query: 421 SAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEEVKQDGVTIIID 242
           +A +++KE+  KE       L++ V   GC+GL Y+      K   D   ++DGV +++D
Sbjct: 33  NASQRLKELHAKEPPSEGKMLRLSVEAGGCSGLQYSFSLDVKKNSDDRIFEKDGVKLVVD 92

Query: 241 KKAQLTLLGTEMDYVEDKLSAEFVFN-NPNIKGTCGCGEXFSI 116
             +   + G  +DY E+ + + FV + NP+  G C C   F +
Sbjct: 93  DVSYDFVKGATVDYEEELIHSTFVVSTNPSAVGGCSCKSSFMV 135


>08_02_0445 + 17218136-17218333,17219595-17219725,17219908-17220112
          Length = 177

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
 Frame = -2

Query: 490 ASATVRAVKKRILPSRA---ALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLS 320
           +SA   A ++   PS A    + +T   ++++KE+  KE       L++ V   GC+G  
Sbjct: 37  SSAAAAATERASPPSPADPDTVHMTDGCIRRLKELHAKEPPSEGKMLRLSVEAGGCSGFQ 96

Query: 319 YTLDYAKTKEKLDEEVKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFV 170
           Y+      K   D   +++GV +++D  +   + G  +DY E+ + + FV
Sbjct: 97  YSFSLDDKKNSDDRIFEKEGVKLVVDDVSYDFVKGATVDYEEELIRSAFV 146


>01_07_0105 - 41104655-41104851,41105818-41107150
          Length = 509

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -2

Query: 442 AALVLTPSAVKKVKEIMQKEEAK 374
           AA   TP+AVKK+ E  +KEEAK
Sbjct: 117 AAAKATPAAVKKIVEEKKKEEAK 139


>02_05_1219 +
           35011571-35011897,35012008-35013780,35013915-35014068,
           35014158-35014801
          Length = 965

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = -2

Query: 403 KEIMQKEEAKGYVGLKVGVRQRGCNGLS---YTLDYAKTKEKLDEEVKQDGVTIIIDKKA 233
           + +  K+++KG+   K G     C+G S     ++ ++ K +  E   +  +T++ +K A
Sbjct: 193 RNLRPKKDSKGHPNQKAGTHSEPCSGFSDQTLRMNSSRNKHQGKEPSCEKRMTLVREKFA 252

Query: 232 QLTLLGTEMDYVEDK 188
           +   L T+   +  K
Sbjct: 253 EAKRLATDEKLLHTK 267


>05_04_0048 -
           17493775-17494431,17494506-17494801,17494851-17494958,
           17495463-17495544,17495561-17495740
          Length = 440

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 175 FVFNNPNIKGTCGCG 131
           FV  NP + G+CGCG
Sbjct: 65  FVSGNPGLHGSCGCG 79


>01_01_0837 + 6533838-6534356
          Length = 172

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 484 ATVRAVKKRILPSRAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNG 326
           A + + K ++ P RAA       V +VK ++ KEEA   + L V     G  G
Sbjct: 63  AAIGSSKPKVSPRRAAQGGQRKGVVRVKVVLTKEEAARLLSLTVVSAGAGAGG 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,313,663
Number of Sequences: 37544
Number of extensions: 203955
Number of successful extensions: 475
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)