Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I19
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   1.7  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 21/95 (22%), Positives = 44/95 (46%)
 Frame = -2

Query: 454 LPSRAALVLTPSAVKKVKEIMQKEEAKGYVGLKVGVRQRGCNGLSYTLDYAKTKEKLDEE 275
           L  R  L+ + +   +V+ + ++     Y+ L VG+    C+ +     Y   + K    
Sbjct: 380 LGERQTLMFSATFPDEVQHLARRF-LNNYLFLAVGIVGGACSDVEQNF-YEVARNK---- 433

Query: 274 VKQDGVTIIIDKKAQLTLLGTEMDYVEDKLSAEFV 170
            K+D +  I++++     LG  + +VE K  A+F+
Sbjct: 434 -KKDLLKEILERENDSGTLGGTLVFVEMKKKADFI 467


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 457 ILPSRAALVLTPSAVKKVKEIMQKEEAK 374
           I+ S AA+VLT   V+K      + EAK
Sbjct: 81  IVSSYAAIVLTLKKVRKRAGASGRREAK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,269
Number of Sequences: 438
Number of extensions: 1997
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)