Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I18
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227     32   0.56 
02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722           31   0.74 

>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
          Length = 492

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
 Frame = -2

Query: 730 SCCSLGXKTSESCISKKF*ILFSCYLYIDAYRGLKMNIDHPYWYAGSIH-RGHCSPLSPG 554
           SCC +G   + S + K      +C     ++R   + I+ P     S H RG  + +S G
Sbjct: 194 SCCKIGFLKTTSVLQK-----LNCLRVQHSHRLDMIEINAPM--LSSFHYRGPLTVISLG 246

Query: 553 VFPELCHMS-----WLFLWYYLLTNLPTMAKNIKKVYL 455
              +L  ++     W  +++Y  T LPT+A+N++ ++L
Sbjct: 247 DAVQLRDVNLLLYPWHRMFHYARTKLPTIARNVENLFL 284


>02_02_0064 + 6485145-6487884,6487900-6488247,6488343-6488722
          Length = 1155

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 478 LPSWADWLTNSTTRRAMTCDTARGTLRGRAVNNDLCG 588
           L SW D  T     R ++C  A G  RGR V  DL G
Sbjct: 69  LESWGDGSTPLCRWRGVSCGVAAGRRRGRVVALDLAG 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,974,962
Number of Sequences: 37544
Number of extensions: 289603
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)