Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I18
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical ...    29   4.7  
U53141-8|AAA96110.3|  572|Caenorhabditis elegans Prion-like-(q/n...    28   8.1  
AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 558 PECSPSCVTCHGSSCGTIC*PICPRWQ-KTLRKCTYLFI 445
           P C+ S   C GS+  ++C  ICP  +  T  +  Y F+
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFL 46


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 558 PECSPSCVTCHGSSCGTIC*PICPRWQ-KTLRKCTYLFI 445
           P C+ S   C GS+  ++C  ICP  +  T  +  Y F+
Sbjct: 8   PACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFL 46


>AC006729-7|AAF60463.1|  157|Caenorhabditis elegans Hypothetical
           protein Y24D9A.6 protein.
          Length = 157

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -3

Query: 156 FNKLNAQFINIIVFKHSYCIFLSFYXRDCFYSIVXFH*LLFFEYTFLCSVVD 1
           + K N QFI  ++F  S  +   FY + CF   + F     F++ FL S++D
Sbjct: 4   YRKKNGQFIFCLIFMCSSPLKKIFYSKTCFTHFLSF----LFQF-FLNSIID 50


>U53141-8|AAA96110.3|  572|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 13
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 555 ECSPSCV-TCHGSSCGTIC*PIC 490
           +C P+C+ +C  SSC   C P+C
Sbjct: 177 QCMPACLPSCVQSSCAPACQPMC 199


>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 702 VNRVFQRNFKYCFHVIYISMLIEDL 628
           ++ +FQ NF++ F  +YIS  +E L
Sbjct: 10  ISEIFQENFRFIFFKLYISETLECL 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,883,774
Number of Sequences: 27780
Number of extensions: 289621
Number of successful extensions: 764
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)