Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I16
(470 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF020589-1|AAC98895.1| 86|Homo sapiens cytochrome C oxidase su... 114 1e-25
X15341-1|CAA33392.1| 86|Homo sapiens protein ( Human COX VIa-L... 112 7e-25
U83702-1|AAD00554.1| 86|Homo sapiens cytochrome c oxidase subu... 112 7e-25
BC107861-1|AAI07862.1| 109|Homo sapiens cytochrome c oxidase su... 112 7e-25
BC070186-1|AAH70186.1| 109|Homo sapiens cytochrome c oxidase su... 112 7e-25
BC007723-1|AAH07723.1| 109|Homo sapiens cytochrome c oxidase su... 112 7e-25
AL160264-2|CAI20472.1| 109|Homo sapiens protein ( Human DNA seq... 112 7e-25
AL021546-1|CAA16494.1| 109|Homo sapiens cytochrome c oxidase su... 112 7e-25
M83308-1|AAA52062.1| 97|Homo sapiens cytochrome c oxidase subu... 93 6e-19
U66875-1|AAC51328.1| 97|Homo sapiens cytochrome oxidase subuni... 90 3e-18
BC029818-1|AAH29818.1| 97|Homo sapiens cytochrome c oxidase su... 90 3e-18
>AF020589-1|AAC98895.1| 86|Homo sapiens cytochrome C oxidase
subunit VIa homolog protein.
Length = 86
Score = 114 bits (275), Expect = 1e-25
Identities = 44/73 (60%), Positives = 57/73 (78%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK +++FVA P + + MLN +L + E HERPPFV Y ++RIRTK FPWGDG +LFHN
Sbjct: 14 MWKALTYFVALPGVGVSMLNVFLKSRHEEHERPPFVAYPHLRIRTKPFPWGDGNHTLFHN 73
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 74 PHVNPLPTGYEDE 86
>X15341-1|CAA33392.1| 86|Homo sapiens protein ( Human COX VIa-L
mRNA for cytochrome c oxidase liver-specific subunitVIa
(EC 1.9.3.1). ).
Length = 86
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 14 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 73
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 74 PHVNPLPTGYEDE 86
>U83702-1|AAD00554.1| 86|Homo sapiens cytochrome c oxidase subunit
VIa protein.
Length = 86
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 14 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 73
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 74 PHVNPLPTGYEDE 86
>BC107861-1|AAI07862.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>BC070186-1|AAH70186.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>BC007723-1|AAH07723.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>AL160264-2|CAI20472.1| 109|Homo sapiens protein ( Human DNA
sequence from clone RP3-405J24 on chromosome 6 Contains
the FDG2 gene for FGD1 family member 2, the gene for a
novel protein ).
Length = 109
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>AL021546-1|CAA16494.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 112 bits (269), Expect = 7e-25
Identities = 44/73 (60%), Positives = 55/73 (75%)
Frame = -3
Query: 336 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHN 157
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK FPWGDG +LFHN
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHN 96
Query: 156 PHVNALPSGYEDD 118
PHVN LP+GYED+
Sbjct: 97 PHVNPLPTGYEDE 109
>M83308-1|AAA52062.1| 97|Homo sapiens cytochrome c oxidase subunit
VIa protein.
Length = 97
Score = 92.7 bits (220), Expect = 6e-19
Identities = 38/70 (54%), Positives = 51/70 (72%)
Frame = -3
Query: 333 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNP 154
W+ ++F +A P++AL N+YL H ERP F PY+++RIRTK +PWGDG +LFHN
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRERPEFRPYQHLRIRTKPYPWGDGNHTLFHNS 85
Query: 153 HVNALPSGYE 124
HVN LP+GYE
Sbjct: 86 HVNPLPTGYE 95
>U66875-1|AAC51328.1| 97|Homo sapiens cytochrome oxidase subunit
VIa heart isoform precursor protein.
Length = 97
Score = 90.2 bits (214), Expect = 3e-18
Identities = 37/70 (52%), Positives = 50/70 (71%)
Frame = -3
Query: 333 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNP 154
W+ ++F +A P++AL N+YL H RP F PY+++RIRTK +PWGDG +LFHN
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNS 85
Query: 153 HVNALPSGYE 124
HVN LP+GYE
Sbjct: 86 HVNPLPTGYE 95
>BC029818-1|AAH29818.1| 97|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 2 protein.
Length = 97
Score = 90.2 bits (214), Expect = 3e-18
Identities = 37/70 (52%), Positives = 50/70 (71%)
Frame = -3
Query: 333 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPWGDGQKSLFHNP 154
W+ ++F +A P++AL N+YL H RP F PY+++RIRTK +PWGDG +LFHN
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNS 85
Query: 153 HVNALPSGYE 124
HVN LP+GYE
Sbjct: 86 HVNPLPTGYE 95
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,981,556
Number of Sequences: 237096
Number of extensions: 1285714
Number of successful extensions: 2228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2225
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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