Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I13
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0009 - 12132781-12133272                                         28   3.2  
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    27   7.3  
04_04_0617 - 26642602-26642637,26643307-26643565,26644610-266447...    27   9.7  

>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 282 RSSTWAREQRWSCSKPAPERRRRIGSLR 365
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -2

Query: 339 ALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVL 208
           A+++A+ M +  P PRW + + ++    ++ D   KA  A+  L
Sbjct: 259 AVIMAIGMWNLPPSPRWLLLRAVQGKA-SVEDNKKKAIQALRSL 301


>04_04_0617 -
           26642602-26642637,26643307-26643565,26644610-26644796,
           26644981-26645044
          Length = 181

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = +3

Query: 240 CR--HECSCPFFQFS*RSSTWAREQRWSCSKPAPER 341
           CR  H   CPF      SS W    R+ C +   ER
Sbjct: 129 CRPLHPARCPFGPGPGGSSRWTGRMRYQCGRQRDER 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,163
Number of Sequences: 37544
Number of extensions: 163829
Number of successful extensions: 381
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)