Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I11
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 36 0.006
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 36 0.006
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 36 0.006
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 36 0.006
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 36 0.006
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 36 0.006
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 36 0.006
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 36 0.006
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 36 0.006
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 36 0.006
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 36 0.006
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 28 1.2
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.0
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.2
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 6.2
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 702 YKEGDLVAVKKTQFG---TGMKLKPKFLGPYRIVKVKRKNRYNVEKADA 565
++ GDLV VK+T+ G KL P F GP+ +++ N Y ++ D+
Sbjct: 1192 FQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDS 1240
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 121 LHPSYHAFNKTSFPHSAVLHVSLS--SELP-FYNTNILKH 231
LH Y+ NK + +S ++ VS++ LP FYN N++KH
Sbjct: 85 LHNRYN--NKQIYTYSGIVLVSINPYQNLPEFYNDNLIKH 122
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 603 KRKNRYNVEKADAQVEGPNKTTTSADFMKKWPDYLSD 493
++KN Y ++K AQ + N ++KW D +++
Sbjct: 144 RKKNEYEMKKKGAQSKQTNAPKKGKKQLRKWDDQITE 180
>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 150
Score = 25.8 bits (54), Expect = 6.2
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -1
Query: 277 LFCLRMIYNFLYNFLYVLRC*CYK-KVTLRTDLRAGRPN 164
+F + M+Y LY LYV C CYK + + RPN
Sbjct: 73 IFIIEMLYYELYLTLYV--CWCYKLRSDFWNEAAKNRPN 109
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 607 LYYSIWSQKLWFQFHSCTKLSLFHSY*VAFLVYSTXF 717
L YS W+ + FH K+S+F ++ V + F
Sbjct: 88 LLYSSWASVMQESFHFLEKISMFDTFLVRVFQFCAFF 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,371,957
Number of Sequences: 5004
Number of extensions: 43356
Number of successful extensions: 131
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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