Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I11
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical...    30   1.4  
AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U80845-4|ABB51197.1|  287|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>AC006661-10|AAF39887.1|  843|Caenorhabditis elegans Hypothetical
           protein H20J04.1 protein.
          Length = 843

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 717 KXCTIYKEGDLVAVKKTQFGTGMKLKPKF 631
           K   +YK+ DL  V  TQ GTG+ + P F
Sbjct: 246 KKLEVYKKVDLTRVSATQVGTGVAISPFF 274


>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 399 LLAY-DVLISFYHKMSFVFFLS*FCCNMFSL*SYDVNVIVVNCFV 268
           LL Y D+L   +  M+ V+ ++  CC + ++ S+ +N  ++ CF+
Sbjct: 15  LLQYSDILHLLFVCMAMVYLVTDVCCLVAAVLSFCINFFIITCFL 59


>Z81084-2|CAB03107.1|  276|Caenorhabditis elegans Hypothetical
           protein F46A9.2 protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 624 PYRIVKVKRKN---RYNVEKADAQVEGPNKTTTSADFMKKWPDYLSD*INRKDEFKIGSM 454
           P +++KV  K    RYN+EK   + E  +    S DF       + D   ++ E K+G+M
Sbjct: 167 PKKLMKVVTKGDGGRYNLEKLLVETETDSIKKISEDFAMILQQGMDDKRTKEQEMKMGNM 226

Query: 453 K 451
           +
Sbjct: 227 E 227


>U80845-4|ABB51197.1|  287|Caenorhabditis elegans Hypothetical
           protein C24A8.6 protein.
          Length = 287

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 577 LNIVSILSFDLYYSIWSQKLWFQFHSCTKLSLFHSY*VAFLVYST 711
           LN++ I  + L +++WS  L   FH  T L   +S  + F +YST
Sbjct: 87  LNMIKI--YKLIFNVWSADLEIWFHWFTALGYLNSS-LNFFIYST 128


>U80845-2|AAK39179.2|  582|Caenorhabditis elegans Hypothetical
           protein C24A8.1 protein.
          Length = 582

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +1

Query: 577 LNIVSILSFDLYYSIWSQKLWFQFHSCTKLSLFHSY*VAFLVYST 711
           LN++ I  + L +++WS  L   FH  T L   +S  + F +YST
Sbjct: 458 LNMIKI--YKLIFNVWSADLEIWFHWFTALGYLNSS-LNFFIYST 499


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,854,990
Number of Sequences: 27780
Number of extensions: 236659
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)