Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I10
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.97
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 27 1.7
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 3.0
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc... 26 3.0
SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom... 26 3.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 5.2
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 5.2
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 25 5.2
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 25 6.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 6.8
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 6.8
SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|c... 22 8.2
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 9.0
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo... 25 9.0
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 25 9.0
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 0.97
Identities = 31/123 (25%), Positives = 57/123 (46%)
Frame = +2
Query: 101 PNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLLMPSTIL 280
P++ S S SS +S S SSS + +SS +S ++S+ + S+
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300
Query: 281 TTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLGTIPSTSDSKN 460
T+ S I++ S S + +L+S+++ + F + P+ S TI S+S S +
Sbjct: 301 TSTSSTISSSSSSSS----SFSSTLSSSSMSSSSSFS-----SSPTSSSSTISSSSSSPS 351
Query: 461 DNS 469
+S
Sbjct: 352 SSS 354
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 152 NSWSEHSSSK--QACMFLSSVTSRGREFLNSSTRLRFLLMPSTILTTEYSPIAAPSCSFE 325
+S+S+ ++S+ + F S +S E+ SST LL PS++ + + S
Sbjct: 104 SSYSDPATSQLPSSTSFFSPTSS---EYTPSSTESSSLLDPSSVSSAILPSSTSVEVSIS 160
Query: 326 PAILATEDSLTSAT 367
+ L++ D LTS+T
Sbjct: 161 SSSLSSSDPLTSST 174
Score = 25.8 bits (54), Expect = 3.9
Identities = 31/129 (24%), Positives = 52/129 (40%)
Frame = +2
Query: 83 IGDGGSPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLL 262
+ SP+S S + SS + S SSS LSS +S +SS+
Sbjct: 216 VSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSS----S 271
Query: 263 MPSTILTTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLGTIPS 442
+ S+ ++ SP + S + ++ + TS+TI + T S S+ + S
Sbjct: 272 IISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331
Query: 443 TSDSKNDNS 469
S S +S
Sbjct: 332 FSSSPTSSS 340
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -2
Query: 475 VSTVIVLRVRSGRYRSQ*I*GTGDHNAELEAVVRADGGRCQ 353
V V +R+ +GR + I G G HNA+ AVV GGR Q
Sbjct: 70 VRKVARVRLSTGRSVTAYIPGIG-HNAQEHAVVLLRGGRAQ 109
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 290 YSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLG 430
Y+P A SC + P A E + H FCIM+ +++LG
Sbjct: 1326 YNPEAYSSCQYCPYKNADELMVGFGYHYNHKWRNFCIMIGYTAFNLG 1372
>SPAC22E12.16c |pik1||phosphatidylinositol kinase
Pik1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -3
Query: 255 NLSLVEEFKNSRPRLVTLDKNIQACLLD-ECSDHELRHRNIELPKDSLRKEFGDPPS 88
N L+E N+ + ++ KN+ L + E + ++ +N+ KD K+FGDP S
Sbjct: 626 NSGLIETITNAIS-VHSIKKNLTKQLREAELAQGKIAGKNVVTLKDYFIKQFGDPNS 681
>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 309 GAAMGEYSVVRIVDGIKRNLSLVEEFKNSRPRLVTLDKNIQAC 181
G +GE ++V I N++L FK+S R + KN C
Sbjct: 169 GIVIGETAIVEDGVSIWHNVTLGSTFKDSGARHPVIRKNAMLC 211
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 5.2
Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Frame = +2
Query: 98 SPNSFRSESFGSSMFL*RNSWSEHSSSKQACMFLSSVTSRGREFLNSSTRLRFLLMPSTI 277
SP+S S S SS +S S SSS + SS +S +SS+ +P T
Sbjct: 154 SPSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITS 212
Query: 278 LTTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFCIMVTGPSYSLGT---IPSTS 448
T+ ++ S S + S + T + F + VT S S T +PS++
Sbjct: 213 STSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSST 272
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 5.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 200 SSVTSRGREFLNSSTRLRFLLMPSTILTTEYSPIAAPSCSFEPAILATEDSLTS 361
S + RE SST+ + S ++ P APS S +P+ +T S S
Sbjct: 330 SFTIEQNRENEKSSTKNDSTVSSSAVVMAPAGPAMAPSASNKPSASSTTKSSNS 383
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 434 IPSTSDSKNDNSGNHILVL 490
+ ++S NDN GNH L+L
Sbjct: 406 VNNSSSGHNDNEGNHSLIL 424
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.0 bits (52), Expect = 6.8
Identities = 6/19 (31%), Positives = 16/19 (84%)
Frame = +1
Query: 85 WRRWIAEFFSERILWKFNV 141
WRR++ +F++E+ +++N+
Sbjct: 46 WRRFVHDFYTEKGTFRYNI 64
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 254 FLLMPSTILTTEYSPIAAPSCSFEPAILATEDSLTSATICTHHCFKFC 397
F+L+ S + SP P + D++ A IC H +FC
Sbjct: 257 FMLLSSIAASLPLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFC 304
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 6.8
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -3
Query: 276 IVDGIKRN-LSLVEEFKNSRPRLVTLDKNIQACLLDECSDHELRHRNIELPKDSLRKEFG 100
I +G K+ LSL+ +RP L ++ LD CS+ H N SL++
Sbjct: 385 IPEGAKKIILSLLNPDSQNRPSLDSILGTAWVRKLDCCSNFSTDHEN-----KSLQEVDF 439
Query: 99 DPPSPILKKSI 67
D PI +KS+
Sbjct: 440 DASKPITRKSL 450
>SPAC23C11.09 |||alanine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 959
Score = 22.2 bits (45), Expect(2) = 8.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 32 NKTNNYI*NVFHILFFKI 85
NKT+NY +VF +F KI
Sbjct: 258 NKTSNYDTDVFSPIFAKI 275
Score = 20.6 bits (41), Expect(2) = 8.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +2
Query: 71 LFFKIGDGGSPNS 109
L F I DGG PN+
Sbjct: 310 LTFAISDGGVPNN 322
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 249 SLVEEFKNSRPRLVTLDKNIQACLLDECSDHELRHRNIELPKDSLRKEFGD 97
++V + +R + N+ +DE D E++ NI KD+ K D
Sbjct: 236 TIVSDRNETRKNVFGFGYNLPTMTVDEYLDEEMKRGNIISQKDNPPKSDSD 286
>SPAC637.11 |suv3||ATP-dependent RNA helicase
Suv3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 198 KNIQACLLDECSDHELRHRNIELPKDSLRKEFGDPPSPI 82
K I CLL E + IE + L+K+ D +PI
Sbjct: 123 KKIHDCLLSEYRKYVRYQERIEETRPDLQKQLTDLKNPI 161
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 382 LLQVLHYGHRSLIFIGNDTVHFGLEER 462
LLQ + Y L+ +GND + +E+R
Sbjct: 308 LLQGMVYSDMDLLLLGNDADDYDVEDR 334
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,995
Number of Sequences: 5004
Number of extensions: 44096
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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