Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I10
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.9  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    22   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   5.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.7  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   7.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 399 LWSPVPHIHWE 431
           LWS VPH+ W+
Sbjct: 100 LWSLVPHMAWQ 110


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.
          Length = 80

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 400 YGHRSLIFIGNDTVHF 447
           YG+++++ +  DT HF
Sbjct: 27  YGYKNIMTLSQDTSHF 42


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 45 LLVLFIYCVGVCA 7
          LL+  ++CVG+C+
Sbjct: 12 LLISAVFCVGLCS 24


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 11/11 (100%)
 Frame = +1

Query: 412 SLIFIGNDTVH 444
           SL+++GN++VH
Sbjct: 10  SLLYLGNESVH 20


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 319 FRAGDLGHRGLFDIGHHLHAPLLQVLHYGHRSLIFI 426
           F  G+L    +F        PLL+ L+ G+ ++IF+
Sbjct: 102 FPKGELFDATVFTYNITNSTPLLKKLYGGNSTIIFL 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,141
Number of Sequences: 438
Number of extensions: 3064
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)