Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I07
         (381 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     53   9e-08
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     53   9e-08
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     52   2e-07
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491...    26   8.7  
01_02_0022 + 10290033-10290407,10290497-10290848,10290923-102910...    26   8.7  

>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = -2

Query: 353 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLIRRPFK 177
           F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   +   +
Sbjct: 33  FTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMR 92

Query: 176 AGARRSLYKVKRLLKANHYRTDL 108
              R+    VK  +  N+YR DL
Sbjct: 93  KEFRKMAKAVKNQVSDNYYRPDL 115


>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -2

Query: 353 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNLIRRPF 180
           FSKEPNN+ N+HS++++GL +KK V  V+    K   VV    K  +  KPA    +   
Sbjct: 33  FSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLYHKSVM 91

Query: 179 KAGARRSLYKVKRLLKANHYRTDL 108
           +   R+    VK  +  N+YR DL
Sbjct: 92  RKEFRKMAKAVKNQVSDNYYRPDL 115


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
 Frame = -2

Query: 353 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLIRRPFK 177
           F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   +   +
Sbjct: 33  FTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMR 92

Query: 176 AGARRSLYKVKRLLKANHYRTDL 108
              R+    VK  +  N+YR DL
Sbjct: 93  KEFRKMAKAVKNQVSDNYYRPDL 115


>05_01_0564 -
           4919294-4919391,4919491-4919620,4919700-4919789,
           4919882-4919987,4920087-4920187,4920347-4920442,
           4920549-4920648,4920761-4920897,4920980-4921111,
           4921222-4921320,4921397-4921594,4921715-4921892,
           4922020-4922075,4922168-4922320,4922422-4922514,
           4922605-4922706,4922817-4922878,4922995-4923090,
           4923354-4923453,4923546-4923617,4923728-4923775,
           4923853-4923996
          Length = 796

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 252 GIHSSVQESKGYQKAR*KLNPPSIQGWCQEVTVQSEEVVKG 130
           G++    E + ++K     NP  ++ W  ++  +S+EV+KG
Sbjct: 703 GVNPLKVEIRLFEKLFLSENPVELEDWLGDLNPRSKEVIKG 743


>01_02_0022 +
           10290033-10290407,10290497-10290848,10290923-10291070,
           10291145-10291225,10291651-10291822,10292120-10292158,
           10292384-10292543,10292676-10292779,10292979-10293278
          Length = 576

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 244 VNPFLSGFSTTPTAFL*IKPLYLKEWRLVTLFGSLLNG 357
           + PF SG      + L +K  + K WRL    GS++ G
Sbjct: 237 IEPFCSGVYAGDPSKLSMKAAFGKVWRLEDTGGSIIGG 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,196,520
Number of Sequences: 37544
Number of extensions: 194284
Number of successful extensions: 492
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)